Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01064 ATGTTTCCATGCATAAGTTGTACGAAGCAAACGGCGGAGGATGAGGAAGAAGGTGGTGAGAGTGGCACGCCGAGTACAAAAGAAGCCGTCAAAAGCCTGAGCTCGCAGTTGAAGGATATGGCACTGAAGTTTTCAGGTGCTTACAAGCAGTGCAAACCTTGCACAGGGTCCAGTAGCTTCAAGAAAGGACAGAGACCATTTCCTGACTTTGACACCGTTTCTGATGGGGTTCCATACCCCTATATTGGAGGTGTAAACTCAACTTCAACCCCTAAATGGGATTTGAGCTCCAATTTCACTGGTGGTAGCCAAAGATTTATGGGGGGATTCAGTGGTGATAGGACCCCTAGAGTGCCTGAGGCAGCACCAGCCCCTGATGTAGTTGTTCAGGATCAAGAAGAAAACCAGGAGTGGGTAGCACAGGTTGAACCAGGGATTAGCATTACCTTTGTGACTCTTCCTAATGGGGCAAATGATCTCAAAAGAATTCGCTTCAGCCGAGATATTTTTGACAGGTGGCAGGCTCAAAAATGGTGGACTGAGAATTACGAGCGAATCAGTGAACTTTACAACGTCCATAGATACAATCAGCAAGATCAGAACACTACTACTCCTTCGAGATCTGACCAGGATGAGATTACTTCCTTTGAACAACCAAGAGATTCATCTGTCTCAAGACTGACATTTTCACAAGAAAACCCTGTGATCCCTTCCATGGCCAAGGATTGGACACCGATGAATCAAGGTGGTGGTGGCCAAAACCTCAATGCAGGGTCATCTGTTGAAGCATCAAGGACAACCACCTCTTCTAGAGATGAGGCTTCAATGAGCAATGCCAGTGAAATGGAGGCAGAATGGGTTGAACAAGATGAACCTGGAGTGTACATCACAATCAAGCAATCCGCTGATGGAACAAAGGAGCTTCGCCGTGTCAGATTCAGCCGTGAGAGGTTTGGTGAGGGACATGCAAAGAAATGGTGGGAAGACAACAGGGAGAGAATTCAAGCTCAATATCTCTGA 1020 0.4676 MFPCISCTKQTAEDEEEGGESGTPSTKEAVKSLSSQLKDMALKFSGAYKQCKPCTGSSSFKKGQRPFPDFDTVSDGVPYPYIGGVNSTSTPKWDLSSNFTGGSQRFMGGFSGDRTPRVPEAAPAPDVVVQDQEENQEWVAQVEPGISITFVTLPNGANDLKRIRFSRDIFDRWQAQKWWTENYERISELYNVHRYNQQDQNTTTPSRSDQDEITSFEQPRDSSVSRLTFSQENPVIPSMAKDWTPMNQGGGGQNLNAGSSVEASRTTTSSRDEASMSNASEMEAEWVEQDEPGVYITIKQSADGTKELRRVRFSRERFGEGHAKKWWEDNRERIQAQYL 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01064 339 MobiDBLite consensus disorder prediction 197 288 - -
Cca06g01064 339 ProSiteProfiles BRX domain profile. 284 339 IPR013591 -
Cca06g01064 339 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 339 IPR044532 -
Cca06g01064 339 Pfam Transcription factor BRX N-terminal domain 21 54 IPR027988 -
Cca06g01064 339 MobiDBLite consensus disorder prediction 1 32 - -
Cca06g01064 339 PANTHER PROTEIN BREVIS RADIX-LIKE 1 339 - -
Cca06g01064 339 MobiDBLite consensus disorder prediction 197 237 - -
Cca06g01064 339 ProSiteProfiles BRX domain profile. 136 191 IPR013591 -
Cca06g01064 339 MobiDBLite consensus disorder prediction 247 277 - -
Cca06g01064 339 Pfam Transcription factor regulating root and shoot growth via Pin3 283 338 IPR013591 -
Cca06g01064 339 Pfam Transcription factor regulating root and shoot growth via Pin3 136 190 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01064 Cca-Chr6 24686601 24693109 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01064 1 339 Major Intrinsic Protein MIP AT1G31880 55.769 9.27e-127 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01064 - - gmx:100809614 493.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01064 06 24686601 24693109 Cca06g01064 06 24686601 24693109 ECH