Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01062 ATGGCTGCTTCAAGCTGTCTCTTGAGGGTGGAAGAGATAGGAGGCAAAGGAAGAGGTGTTGTTGCAGCACAGCCCCTCAAAGCAGGCCAAACACTCCTCACTGAGTCCCCTCTCATTGtctattcagcttctcctctcttctcttctccacccttcAAACACTGTCACCACTGCTTCACAATCATACCCTCTCACACCATTAATCCCCCATCATGCCCCTCTTGCTCCCACCACCTTTTCTGCTCCCAAACATGCCTCAACTCATCCTCACACTCCCCATGGGCCTGCAAGGCCCTCACATCTCTCACCAACTCAACACCCCTCCAACAACAGCCCCAAGAACGCCAAGTCCAGGCCCGTTTCGTTGTAGCGGCCCACGACCTTCTCCTCCACACCCCCTCTCACATCAACATGTTGCTCTCTCTCCAAGGCACGCCCGATGCAGCAATCATCGACGCTGCCAACTTTCTCCACTCTCTCATCTCACCCCTCTTCCCACCCCACTCCCAACTTTCCGCGGATCTCGTCGCACAACTCATGGCAAAGGACAGGCTCAACTCCTTTTGCTTAATGCACCCCTATTCCCCCCATGGGCCTCAGAGATCCATCAAGGCCTACACCGTTTACGCCAAAGCCTCTCTCTTTAACCATAGCTGTCTTCCTAATGCATGCAGGTTTGACTACGTGGACACGAGCGAGGAACACAACACTGACATCGTTGTTCGGTTGGTCGAGGATGTTCCTGAGGGCAAAGAGGTTTGCATCAGCTATATCAGAGTTGGGAGGGACTACTGTACCAGGAAAAGGATCTTGATGGAGGATTATGGATTTACCTGTGAATGTGATAGGTGTAAGATTGAAGCCAGTTGGGGTAGCCAAGGGGAGAAAGAGAACAATGATTTACCACACGTGCGCTTCCTTCGTAAGCATGTTTGTGAGAAGGAGAATTGTGCTGGCACTATGGCTCCACTGCCTCCACCATCTCATGTTTTGGAGTGTAACTTCTGTGGTAATTTCAAGACTCACTGTGATACACCTTAG 1041 0.4966 MAASSCLLRVEEIGGKGRGVVAAQPLKAGQTLLTESPLIVYSASPLFSSPPFKHCHHCFTIIPSHTINPPSCPSCSHHLFCSQTCLNSSSHSPWACKALTSLTNSTPLQQQPQERQVQARFVVAAHDLLLHTPSHINMLLSLQGTPDAAIIDAANFLHSLISPLFPPHSQLSADLVAQLMAKDRLNSFCLMHPYSPHGPQRSIKAYTVYAKASLFNHSCLPNACRFDYVDTSEEHNTDIVVRLVEDVPEGKEVCISYIRVGRDYCTRKRILMEDYGFTCECDRCKIEASWGSQGEKENNDLPHVRFLRKHVCEKENCAGTMAPLPPPSHVLECNFCGNFKTHCDTP 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01062 346 ProSiteProfiles SET domain profile. 6 258 IPR001214 GO:0005515
Cca06g01062 346 Gene3D - 110 187 - -
Cca06g01062 346 SUPERFAMILY SET domain 5 280 IPR046341 -
Cca06g01062 346 Gene3D - 54 109 - -
Cca06g01062 346 CDD SET_SMYD 185 284 - -
Cca06g01062 346 Pfam SET domain 17 257 IPR001214 GO:0005515
Cca06g01062 346 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 1 341 - -
Cca06g01062 346 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR2 1 341 IPR044238 -
Cca06g01062 346 SMART set_7 6 264 IPR001214 GO:0005515
Cca06g01062 346 Gene3D SET domain 19 285 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01062 Cca-Chr6 24662161 24663597 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Cca06g01062 SET 5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01062 - - gmx:100808530 501.516