Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01061 ATGAGCGTTCCTCCGCCGCCGCCGCCCCTCTGGACGCCCTTCACGGCGGCGCAGTGGCACGAGCTCGAGCACCAGGCCCTCATCTTCAAGTACCTCAAGGCCGGCCTCTCCGTCCCCCCCGACCTCCTCCTTCCCATCCGCAAGAGCCTCCAATTCCTCTCTCACCCATCTCTGGGCTACTACGGGAAGAAGATAGACCCCGAACCGGGTCGGTGCCGGAGAACCGATGGGAAGAAGTGGAGGTGCTCCAGGGACGCTCACCCTGATTCCAAGTACTGCGACCGCCACATGATACGACGTCGTTACCGTTCAAGAAAGCCTGTGGAATCTCAATCTCACtcctcctcttcttcatcttccgcttcttcCAACCctgttgctgctgctgcttcttctacagcttctgctcctgcttctgcttccgcaactgctTCCACCCTTCACACCCTTCCCTTGCACACCAATGGCGCCAGGGAAGGTTTCTCTTTCACCCTTGGCAACGCCAACACCAACACCCTCCCCCACCTTCACATGGACCCCCTCACTCTCCCTGGTGATTCTGCCAAGAAAACTTATAGGTTTGGACTGAACTCAGAAGCAGACGAGCACAACGTCTTACAGAAAGATCTGGGAAGTGTGAGGTATCAAGGTTATGACTTTACCTCAGATGGCATGTGGTCTCATATGTCTCAAATTCCATCAAGTACTGTGTCAGAATCAAGAAGCAGTTCCACTATGCTAGGCAACTGCTTCCAACAGCAAACAATGCGAGATGCTGAACTCTTGAGCCTGGAAACTGCAAGGACCAAGGAACTAGTCTTCAGTGGCCAGTTAAGTTCATCAGGAAGTTTGAAACAGGAATATCAGCCCCCCCAGTCCCTTTTCAGCGACTGGGACTGGAAGAAGGATTTAAGTTCCTCTACCATTGAGTATAGACCCAACAAGGATTTTAACTGCAATCCAGATGTCAATGTTGATTCAAATGGTTCTTTATAA 996 0.4769 MSVPPPPPPLWTPFTAAQWHELEHQALIFKYLKAGLSVPPDLLLPIRKSLQFLSHPSLGYYGKKIDPEPGRCRRTDGKKWRCSRDAHPDSKYCDRHMIRRRYRSRKPVESQSHSSSSSSSASSNPVAAAASSTASAPASASATASTLHTLPLHTNGAREGFSFTLGNANTNTLPHLHMDPLTLPGDSAKKTYRFGLNSEADEHNVLQKDLGSVRYQGYDFTSDGMWSHMSQIPSSTVSESRSSSTMLGNCFQQQTMRDAELLSLETARTKELVFSGQLSSSGSLKQEYQPPQSLFSDWDWKKDLSSSTIEYRPNKDFNCNPDVNVDSNGSL 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01061 331 Pfam WRC 67 109 IPR014977 -
Cca06g01061 331 MobiDBLite consensus disorder prediction 66 88 - -
Cca06g01061 331 ProSiteProfiles WRC domain profile. 66 110 IPR014977 -
Cca06g01061 331 PANTHER GROWTH-REGULATING FACTOR 1 327 - -
Cca06g01061 331 MobiDBLite consensus disorder prediction 103 125 - -
Cca06g01061 331 PANTHER - 1 327 IPR031137 GO:0005634|GO:0006351|GO:0032502
Cca06g01061 331 Pfam QLQ 13 47 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cca06g01061 331 ProSiteProfiles QLQ domain profile. 13 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cca06g01061 331 SMART QLQ_2 12 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cca06g01061 331 MobiDBLite consensus disorder prediction 109 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01061 Cca-Chr6 24654899 24658442 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01061 13 141 GRF Transcription Factor Family AT4G37740 51.034 2.54e-39 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Cca06g01061 WRC 2.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01061 - - gmx:100809947 509.99