Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01050 ATGGAGGGTGGAGGAAGAGAAAGTTACAATGGAGTGGTGATGACTATGACAAGAGACCCGAAGCCAAGGCTAAGATGGACAGCAGATCTTCACGACCGGTTTGTGGATGCAGTCACAAAGCTTGGTGGCCCCGATAAGGCGACTCCCAAGTCTGTTCTGAGGTTAATGGGCTTGAAAGGTCTGACACTATATCATTTGAAGAGCCATTTACAGAAGTATAGACTTGGACAGCAGGCTCGAAAACAAAATGAAGAACTGCATAAAGAGAATAGTAGATGTTCGTATGTAAATTTTAGTAATCGTTCTTCAGGGCCTAACACCAGTCACAGAGGAGATAATGAAGGGGGAGAAATTCCAATCGCAGAGGCGCTAAGACATCAGATTGAAGTTCAAAAGAGGTTGGAAGAGCAGCTAGAGGTACAGAAGAAATTGCAGATGAGAATAGAGGCACAAGGGAAGTATTTGCAAGCAGTGTTAGAGAAAGCTCAGAAGAGCCTTTCCCTGGATGGACCAGGCAGTATTGAAGCATCAAGAGCTCAGTTGACTGAATTCAACTCTGCTTTGTCACATTTCATGGAAAATATGAACAAAGATAGCAAACAAAACATAATAGACGTGAATGATTTTTATAGTAAGAGCCATGGCTCAGCTTTACAATATCAGGAAGTAGTGAGAGGAGAAAATAGGGACCAAAAGCCTAAAGTTGAAGGGGGTTCAATACAGTTTGACTTAAACATCAAAGGTAGCAATGACCTTGTATCTGCAGGTGGAGCTGAAATGGATGCCAATATGATTTCGTATAGGGTATAA 810 0.4222 MEGGGRESYNGVVMTMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQARKQNEELHKENSRCSYVNFSNRSSGPNTSHRGDNEGGEIPIAEALRHQIEVQKRLEEQLEVQKKLQMRIEAQGKYLQAVLEKAQKSLSLDGPGSIEASRAQLTEFNSALSHFMENMNKDSKQNIIDVNDFYSKSHGSALQYQEVVRGENRDQKPKVEGGSIQFDLNIKGSNDLVSAGGAEMDANMISYRV 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01050 269 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 10 255 IPR044848 GO:0003700
Cca06g01050 269 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 10 255 - -
Cca06g01050 269 Pfam Myb-like DNA-binding domain 24 74 IPR001005 -
Cca06g01050 269 Pfam MYB-CC type transfactor, LHEQLE motif 119 165 IPR025756 -
Cca06g01050 269 MobiDBLite consensus disorder prediction 81 113 - -
Cca06g01050 269 Gene3D - 20 78 - -
Cca06g01050 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 78 IPR017930 -
Cca06g01050 269 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 21 76 IPR006447 GO:0003677
Cca06g01050 269 Coils Coil 121 151 - -
Cca06g01050 269 MobiDBLite consensus disorder prediction 92 110 - -
Cca06g01050 269 SUPERFAMILY Homeodomain-like 21 78 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01050 Cca-Chr6 24472732 24475957 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01050 12 184 G2-like Transcription Factor Family AT3G24120 54.696 7.31e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Cca06g01050 Myb_DNA-binding 2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01050 - - gmx:100810146 487.648