Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01042 ATGGCAGCTTGCACTGTCTACTCAACACAATCTCTGAGCACAAACTGCTCCATCTCAACCCCAGCAAAGACACAACATGGTTTTCACCAAAGACAGGTAGTTTTCTACACCACAAGCAGGAGGAACAGCAAGAGGGGCAGCCTCAGTGGCAGCAGCAGGTATGTGATAACATGTGCAGCTGGTGACTCACAGACAGTGGTGATTGGCCTGGCAGCTGACTCAGGTTGTGGTAAGAGCACCTTCATGAGGAGGCTGACAAGTGTGTTTGGAGGAGCAGCAGAACCACCAAAGGGTGGCAACCCTGACTCCAACACTCTCATCAGTGACACCACCACTGTCATATGCTTGGATGATTACCACTCTTTGGATAGAACTGGCAGAAAAGAAAAGGGAGTCACTGCTCTTGACCCTAGAGCCAACGATTTTGATCTCATGTATGACCAAGTTAAAGCCCTCAAGGATGGAATTGCTGTTGAAAAACCTATTTACAACCATGTCACTGGCCTCTTGGATCCACCTGAGCTCATCAAACCCCCCAAAATCTTAGTCATTGAAGGGTTGCACCCAATGTTTGATCCTCGAGTCAGAGACCTCTTGGACTTCAGCATCTACCTAGACATTAGCAACGAGGTGAAATTCGCTTGGAAAATTCAGAGAGACATGGCAGAGCGTGGACACAGTCTTGAAAGCATCAAGGCTAGCATTGAAGCAAGAAAGCCTGATTTTGAAGCATATATTGATCCACAAAAGCAATATGCTGATGCAGTGATAGAAGTGTTGCCAACTCAACTGATTCCAGATGACAATGAGGGTAAGATTTTGAGAGTGAGGTTGATACAGAAAGAGGGGGTTAAGTATTTTAGCCCAGTTTACTTGTTTGATGACGGCTCCACCATTTCCTGGATACCATGTGGAAGGAAGCTTACATGTTCATACCCTGGCATCAAATTCTTCTATGGACCAGAGACTTACTACGGAAATGAGGTGTCAGTAGTAGAAATGGATGGACAATTTGACAGACTAGATGAACTAATTTACGTAGAGAGCCACCTAAGCAACCTCTCAACCAAGTTCTATGGAGAGGTTACTCAACAAATGTTGAAGCATGCTGATTTCCCCGGCAGCAACAATGGCACAGGACTCTTCCAAACCATAGTTGGTTTGAAGATAAGAGATCTATATGAACAGATTATATCCACCAAGGCTGAGACTCCAGTAGGAGCAGCAAAAGCTTAG 1236 0.4539 MAACTVYSTQSLSTNCSISTPAKTQHGFHQRQVVFYTTSRRNSKRGSLSGSSRYVITCAAGDSQTVVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANDFDLMYDQVKALKDGIAVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMFDPRVRDLLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFEAYIDPQKQYADAVIEVLPTQLIPDDNEGKILRVRLIQKEGVKYFSPVYLFDDGSTISWIPCGRKLTCSYPGIKFFYGPETYYGNEVSVVEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQIISTKAETPVGAAKA 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01042 411 CDD PRK 67 356 - -
Cca06g01042 411 Gene3D - 62 297 IPR027417 -
Cca06g01042 411 ProSitePatterns Phosphoribulokinase signature. 216 229 IPR006082 GO:0005524|GO:0005975|GO:0008974
Cca06g01042 411 PANTHER PHOSPHORIBULOKINASE 6 411 - -
Cca06g01042 411 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 336 IPR027417 -
Cca06g01042 411 Pfam Phosphoribulokinase / Uridine kinase family 67 265 IPR006083 GO:0005524|GO:0016301
Cca06g01042 411 PRINTS Phosphoribulokinase family signature 72 89 IPR006082 GO:0005524|GO:0005975|GO:0008974
Cca06g01042 411 PRINTS Phosphoribulokinase family signature 181 199 IPR006082 GO:0005524|GO:0005975|GO:0008974
Cca06g01042 411 PRINTS Phosphoribulokinase family signature 216 233 IPR006082 GO:0005524|GO:0005975|GO:0008974
Cca06g01042 411 PRINTS Phosphoribulokinase family signature 234 257 IPR006082 GO:0005524|GO:0005975|GO:0008974
Cca06g01042 411 PANTHER URIDINE KINASE 6 411 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01042 119 293 PRT Gene Family AT3G27440 26.966 1.21e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01042 K00855 - gmx:100777515 775.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01042 06 24375441 24379515 Cca06g01042 06 24375441 24379515 ECH