Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01040 ATGGGTCGCAAACACGAACCCGTCGCCGAAGAAGCCCCTAACAGCCCCGAGCTCGACTCCGagaagaagaagaagaagaagatgaaaaagaataagaacaagGACCAACATCAAAGCGAAACCAGCCCCAAACGAAAGCTCGACCAACTCGACCCTCAAAACGACGCCGAATCgaataagaagaagaaaaagaagaagCACCACGACTCCAAGGAGAATGCAGAGGGAACCAACGGCGCTAGCCGCGACGAGACGCTGACGGACGGTTCCACGCTGACGGACGGTTCCGTGGCGGTTACCGGGAAGAATGCGGGAGACGCGAAATACGCGGCGCTGAAAACGTTCGCGGATTCGGGGCTGCCGGAGAATGTGTTGGCGTGCTGCAAGGGTTTCGAGAAGCCTTCTCCGATTCAGTCCCGAGCGTGGCCTTTCTTATTGGACAGTCGTGATTTGATTGGAATCGCTGCCACTGGCTCAGGGAAGACGTTGGCGTTTGGTATACCTGCGGTTATGCATGTTTTGGGAAAGCGAAAGAGTAAAAGTTCCAAGGGTCGGAACCCTCTCTGCCTCGTGCTCTCTCCCACCAGAGAGCTTGCTCAACAAATATCAGATGTCATGTGTGATGCTGGTAGTACTTGTGGCGTGGAATCAATCTGTTTGTATGGTGGAACCTCCAAAGGGCCACAAATCTCCTCACTAAAATCTGGAATTGACATTGTCATTGGAACCCCTGGTCGTATCCAGGATCTGATTGAAATGGGTGTTTGTTGCCTAAAAGAAGTATCTTTTGTGGTACTTGATGAAGCAGATCGGATGCTTGACATGGGTTTTGAACAAATAGTTCGCTCTATACTGGGTCAGACATGTTCTGTTCGTCAAATGGTTATGTTCAGTGCTACATGGCCATTGCCAGTTCATTATTTGGCACAGGAGTTTATGGATCCTAATCCTGTAAAAGTTGTTGTAGGTTCAGAAGACTTAGCTGCCAATCATGATGTCATGCAGATAGTTGAGGTCTTGGATGACCGTTCCCGTGATAAGCGCCTGCTTTCTTTACTGGGAAAATACCACCAATCTCAGAGGAATCGAGTATTGGTTTTTGTTTTGTACAAAAATGAAGCCACACGAGTTGAAAATATGCTTCAAGGAGGGGGATGGAAGGTTGTGTCAATACATGGGGACAAAGCCCAACATGATCGCACTAAGGCACTGTCATTATTCAAGAAGGGAAGCTGTCCTTTGATGGTTGCTACTGATGTGGCTGCACGGGGATTGGATATTCCAGATGTTGAAGTAGTGATCAACTATAGTTTTCCTCTGACTACTGAAGATTATGTTCATAGAATTGGGCGGACTGGACGAGCTGGTAAGAAAGGTGTTGCCCATACATTCTTCACACAGCAGAATAAGGGACTTGCTGGGGAGCTGGTGAATGTTTTAAGAGAAGCAGGACAAATTGTGCCCGATGCCCTCTTGAAATTTGGCACACATGTAAAAAAGAAGGAGTCCAAACTTTATGGGGCACACTTCAAGGAAATCCCTGTTGATGCTCCAAAGTCTCAAAAGAAAACATTTGCTGACTCTGACGATGAAGACTAA 1599 0.4603 MGRKHEPVAEEAPNSPELDSEKKKKKKMKKNKNKDQHQSETSPKRKLDQLDPQNDAESNKKKKKKKHHDSKENAEGTNGASRDETLTDGSTLTDGSVAVTGKNAGDAKYAALKTFADSGLPENVLACCKGFEKPSPIQSRAWPFLLDSRDLIGIAATGSGKTLAFGIPAVMHVLGKRKSKSSKGRNPLCLVLSPTRELAQQISDVMCDAGSTCGVESICLYGGTSKGPQISSLKSGIDIVIGTPGRIQDLIEMGVCCLKEVSFVVLDEADRMLDMGFEQIVRSILGQTCSVRQMVMFSATWPLPVHYLAQEFMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDKRLLSLLGKYHQSQRNRVLVFVLYKNEATRVENMLQGGGWKVVSIHGDKAQHDRTKALSLFKKGSCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFTQQNKGLAGELVNVLREAGQIVPDALLKFGTHVKKKESKLYGAHFKEIPVDAPKSQKKTFADSDDED 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01040 532 MobiDBLite consensus disorder prediction 79 97 - -
Cca06g01040 532 Gene3D - 323 498 IPR027417 -
Cca06g01040 532 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 332 495 IPR001650 -
Cca06g01040 532 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 113 139 IPR014014 GO:0003724
Cca06g01040 532 MobiDBLite consensus disorder prediction 1 97 - -
Cca06g01040 532 CDD DEADc 129 320 - -
Cca06g01040 532 Pfam Helicase conserved C-terminal domain 347 456 IPR001650 -
Cca06g01040 532 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 14 518 - -
Cca06g01040 532 SMART ultradead3 130 336 IPR014001 -
Cca06g01040 532 MobiDBLite consensus disorder prediction 1 24 - -
Cca06g01040 532 CDD SF2_C_DEAD 333 465 - -
Cca06g01040 532 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 142 319 IPR014001 -
Cca06g01040 532 SMART helicmild6 375 456 IPR001650 -
Cca06g01040 532 Pfam DEAD/DEAH box helicase 136 302 IPR011545 GO:0003676|GO:0005524
Cca06g01040 532 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 469 IPR027417 -
Cca06g01040 532 MobiDBLite consensus disorder prediction 33 59 - -
Cca06g01040 532 Coils Coil 18 38 - -
Cca06g01040 532 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 265 273 IPR000629 -
Cca06g01040 532 PANTHER BNAA08G07020D PROTEIN 14 518 - -
Cca06g01040 532 Gene3D - 18 322 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01040 Cca-Chr6 24348766 24354172 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01040 112 464 Eukaryotic Initiation Factors Gene Family AT3G19760 32.676 9.22e-54 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01040 K14811 - gmx:100806057 904.434