Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01039 ATGGCAGATAGTTCAGTATCGTTTTTATTGGACAAACTGTCTTTGTTGCTACAAGAAGAAGTGAATCTTCAGAGAGGGGTACGTGAAGATGTTCAGCACATCAAATATGAACTAGAACTCCACAAGGGCATCTTAAGGATGGCTGACGCTATGGAACACAAAGACCCTGAACTCAAAGCATGGGTTAAACGAGTGAGAGATGTTGCTCATGACATGGAAGATGCTATAGATGAGTTCAACTTTCGCCTTGTTGATCAACATGGACAAGGCAACAATTCTTCTTTTCACAAGTTTATCTTTGGCATCAAGACAATGAAGGCCCGGCACAGAATTGCTTCAGATATCCAAAGTATCAAGTCCAAAGTGGACATTATATCCCAGGGACGACCAAACATGCCTGGGATAGGCTCAAGCTCAAGTCAACGGTTGTCACCAAGGGTTGATAGCCAAGGAGATGCACTTTTGCTTGAAGAAGCTGATCTAGTCGGTATTGACAAACCCAAAAAGCAAATCAGTGACTTGCTTTTCAATGAAGAAGTGGGTAGGGctgtgattcccatttatgggatgggagggttgggaaaaaccaccttggcaaaacaagtctatgatgatccaaaagtgaagaagcgtttcaggattcatgcttgggttaatgtctcTCAGTCTTTTAAACTAAAAGAGCTTCTGAAAGACTTGGTTCAACAGCTCCACAATGTCATAGGCAAACCAGCCCCGGAAGCAGTTGGGCAAATGACAAGTGACAATCTCAAAGAGGTGATCAAGAGCTTGCTTCAGCGAAGCAGGTACCTCATTGTGCTGGATGATGTGTGGCATGTTAGGGCATGGGATTCTATCAAACTTGCTTTGCCAAATAACAACCGTGGTAGTAGAGTGATGCTTACCACACGCAAGAAAGACATAGCTTTGTATTCCTGTGCTGAATTGGGCAAGGATTTTAACCTTGAATTCTTGCCTGAGGAAGAGGCTTGGCGTCTTTTCTGTAAGAAAACATTTCAGGGTAACTCATGCCCTCCTCATCTGGAGGAAGTTTGCAGGAATATCTTAAAAATGTGTGGGGGGTTACCACTAGCAATTGTGGCAATTGGTGGTGCTTTGGCTACAAGAGGCAGGGCTAACATAGAAGAGTGGCAGATGGTATGCAAAAGTTTTGGCTCTGAGATTGAAGGCAATGACAAACTGGAGGACATGAAGAAAGTCCTTTCCCTCAGTTTCAATGATTTGCCTTACTATCTTAAATCATGCCTGTTTTACCTATGCATGTTTCCTGAGTTTCATGCAATTGAGCACGCGAGATTGGTTCGCTTGTGGATAGCTGAAGGGTTTGTGAATGGAGAAGATGGAAAGACACTTGAGGAAGTTGCAGATAGTTACCTCAAGGAGCTTTTGGACAGAAGTCTGCTGCAAGTGGTAGCAAAAACCAGTGATGGAAGGATGAAGACTTGTCGCATGCATGATCTGTTGAGGGAGATTGTGAATCTGAAGGCAAAGGATCAGAACTTTGCAACAATAGCCAAAGACCAAGACATAATCTGGCCAGAGAAAGTTCGACGTTTATCAATCATAAACACATTGGATAATGTGCAACAAAATAGGACCACATTCCAACTTCGGTCTCTGCTGATGTTTGCCTTATCAGATTCACAAGTGCATTTTTCTATAAGTGCATTGTGTTCTACTGGTTACAACCTTTACCTTCTCAAATATCTCAGTTTGAAGAATACAAAGGTAAGAAACATTCCAGGTTCCATTAAGAAGCTGCAGCAGTTGGAGACATTGGATCTTAAACACTCCTATGTCACTGAATTGCCAGTTGAAATTGTGGAGCTGCAACGGCTACGCCATCTCTTGGTGTACTTTTATGAGATTGAATCCTATGCTTTTTTCCATTCAAGGCATGGCTTCAAGTTGGCTGCACCAATAGGAAAAATGCAATCTTTGCAGAAACTATGTTTTATACAGGCAGACCAAGCTTTGATGATTGAGCTAGGAAAACTCACTCAACTAAGGAGGCTTGGAATTAGAAGGATGAGGCAACAAGATGGGGCTGCTTTGTGTTCTTCCATTGAGAAGATGGTCAATCTCCTCTCATTGTCCATAACTGCAATTGAATATGATGAGATCATTGATATTCACAACATTTCCAGGCCTCCTCAGTATCTCCAGAAGTTATACTTGAGTGGACGTTTGGACAAGTTTCCTCACTGGATAAGTTCTCTCAAGAATCTGGTTCGAGTGTTTCTCAAATGGAGCCAGTTAAAGGAGGATCCTCTGGTGCATCTTCAGGATTTGCCAAATCTAAGACACCTTGAGTTTCTTCAAGTTTATGTTGGTGAGACACTGCATTTCAAGGCTAAAGGGTTTCCTAGTCTGAAGTTCATTCAAGCAGCACTGAGTCCAAGTGGAGGTGCGGATTATTGGAGAGTGCAACATGTTCCAGCAGTTTATTCCTCTTATTGGAGGGATGGTGGTTGGGATGTCTTCTCATTAGATACTTTAGGAGACAGAGAGAGTGATTCCAGTCGTGGTTCTGCAATGAGAAATCTTGAAATTTGTACACTCTGGAAGTCACCTCTGACTGCAAATCTCTTCAAGTTTCAATCAAATAAAGTGGGGAGCATAATTCATTTATTGAATATCAATTCTGAGGTTATCGAATAA 2682 0.4031 MADSSVSFLLDKLSLLLQEEVNLQRGVREDVQHIKYELELHKGILRMADAMEHKDPELKAWVKRVRDVAHDMEDAIDEFNFRLVDQHGQGNNSSFHKFIFGIKTMKARHRIASDIQSIKSKVDIISQGRPNMPGIGSSSSQRLSPRVDSQGDALLLEEADLVGIDKPKKQISDLLFNEEVGRAVIPIYGMGGLGKTTLAKQVYDDPKVKKRFRIHAWVNVSQSFKLKELLKDLVQQLHNVIGKPAPEAVGQMTSDNLKEVIKSLLQRSRYLIVLDDVWHVRAWDSIKLALPNNNRGSRVMLTTRKKDIALYSCAELGKDFNLEFLPEEEAWRLFCKKTFQGNSCPPHLEEVCRNILKMCGGLPLAIVAIGGALATRGRANIEEWQMVCKSFGSEIEGNDKLEDMKKVLSLSFNDLPYYLKSCLFYLCMFPEFHAIEHARLVRLWIAEGFVNGEDGKTLEEVADSYLKELLDRSLLQVVAKTSDGRMKTCRMHDLLREIVNLKAKDQNFATIAKDQDIIWPEKVRRLSIINTLDNVQQNRTTFQLRSLLMFALSDSQVHFSISALCSTGYNLYLLKYLSLKNTKVRNIPGSIKKLQQLETLDLKHSYVTELPVEIVELQRLRHLLVYFYEIESYAFFHSRHGFKLAAPIGKMQSLQKLCFIQADQALMIELGKLTQLRRLGIRRMRQQDGAALCSSIEKMVNLLSLSITAIEYDEIIDIHNISRPPQYLQKLYLSGRLDKFPHWISSLKNLVRVFLKWSQLKEDPLVHLQDLPNLRHLEFLQVYVGETLHFKAKGFPSLKFIQAALSPSGGADYWRVQHVPAVYSSYWRDGGWDVFSLDTLGDRESDSSRGSAMRNLEICTLWKSPLTANLFKFQSNKVGSIIHLLNINSEVIE 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01039 893 Pfam NB-ARC domain 166 413 IPR002182 GO:0043531
Cca06g01039 893 Gene3D - 153 314 IPR027417 -
Cca06g01039 893 PRINTS Disease resistance protein signature 184 199 - -
Cca06g01039 893 PRINTS Disease resistance protein signature 359 373 - -
Cca06g01039 893 PRINTS Disease resistance protein signature 264 278 - -
Cca06g01039 893 PRINTS Disease resistance protein signature 592 608 - -
Cca06g01039 893 Gene3D - 412 502 IPR036388 -
Cca06g01039 893 Gene3D - 5 112 - -
Cca06g01039 893 CDD RX-CC_like 2 126 IPR038005 -
Cca06g01039 893 PANTHER OS09G0270700 PROTEIN 7 791 - -
Cca06g01039 893 SUPERFAMILY L domain-like 491 801 - -
Cca06g01039 893 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 426 IPR027417 -
Cca06g01039 893 Gene3D Ribonuclease Inhibitor 519 806 IPR032675 -
Cca06g01039 893 PANTHER DISEASE RESISTANCE PROTEIN RP 7 791 IPR044974 GO:0006952
Cca06g01039 893 Gene3D - 324 411 IPR042197 -
Cca06g01039 893 Pfam Rx N-terminal domain 6 95 IPR041118 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01039 Cca-Chr6 24339959 24343221 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01039 162 378 WRKY Transcription Factor Family AT5G45050 25.229 1.30e-08 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01039 K13457 - gmx:100305458 1409.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01039 06 24339959 24343221 Cca06g01039 06 24339959 24343221 ECH