Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01028 ATGGCAGAGAGTGCTGTAGGTTTTCTTCTCGAAAGGCTTGCACCTGTTTTTGATAATAAGGTGACATTGTTCGGAGAGGTTCAAGCAGAAGTGCTATGTCTAAAAGGACGGTTGGAGCTGATAAAAGCCTTCTTAAGGGCAGCAGATGCATTAGAAGAGAGTGATGAGGAACTCAAAGTTTGGGTTAAGCAAGTCAGAGATGTTGCTCACGAGGCTGAAGATCTTCTTGATGAATTGGAACTTGTCCAGGTAAATAACCATGCAAATGGATTATCTATTTATCTCCGAGTCAGGAACATGAAAGCTCGTTATCGGATTGCTCATGAGTTAAAAAGCATCAACTCACGCATGAAAACTATTTCTTCAACTGACAAGAGATTCCTCAGTAAGCTTCACACACCTTCAGAGGCTTCAAGTTCCAATTATACAGGAGCATGGCATGATCAACGAGGAGATGCCCTTCTCCTGGACAACACTGATCTAGTAGGCATAGACAGGCCAAAAAAGAAGTTGATAGGGTGGTTGATGAAGGGTTGTCCAGGACGGAAAGTAATTTCTGTTACCGGAATGGGAGGGATGGGAAAAACAACTTTGGTGAAGCAAGCATATGATGATCCAGAAGTAAGAAAACACTTCAAAGCCTGTGTTTGGGTTACTGTTTCTCAATCTTGTAAAGTTGAGGAGCTTCTCAGAGACTTGGCCCAGAAGCTTTTTTCCGAAATAAGGAGACCAATTCCAGAGGGACTGGAAAGCATGTGTAGTGATAAGCTGAAGATGATTATTAAAGATCTGCTGCAGAGGAAGAAATATCTTGTAGTATTTGACGATGTTTGGCATATGTATGAATGGGAAGCTGTCAAATATGCATTGCCTAACAATAATTGTGGCAGCAGGATCATGATCACCACACGCAAATCTGATTTAGCCTCTATTTCCAGCATAGAATCCAATGGTAAGGTGTATAACTTGCACCCCTTGAAGGAAGATGAGGCTTGGGATCTGTTTTGTAGGAACACTTTTCAGGGTCATTCATGCCCCTCATATTTGATGGATATCTGTAAATATATCTTAAGAAAATGTGGGGGTCTTCCCCTTGCAATTGTGGCAATCAGTGGTGTCCTAGCTACAAAAGACAAGCGCAGGATAGATGAGTGGGATATGATTTGCCGTAGCCTTGGAGCTGAAATTCAAGGCAACGGCAAACTTGATAATTTTAAAACAGTATTTAACCTCAGTTTCAATGATTTGCCTTACCATTTGAAATACTGTTTCTTGTACTTGAGCATTTTTCCTGAGGACTATTTGATTCAGCGCATGAGAGTGATTCGCTTATGGATAGCAGAAGGATTTATTGAAGCCAAAGAAGGAAAAACAATGGAAGATGTTGCAAATGATTACCTCAAGGAGCTCCTGAACAGAAACTTAATACAAGTAGCAGAGACAACATCTGATGGAAGGGTCAAAACATTGCGAATCCATGATCTTCTACGGGAGATCATCATCTTGAAGTCCAAGGACCAAAACTTTGCATCCATTGTCAAAGAACAAAGTGTGGCATGGCCGGAAAAGATTAGGCGCCTTTCAGTGCATGGCAGGTTACCATATCGGCAGCAGCATAGGTCGGCCTCTCAACTCCGTTCTCTCTTTATGTTTGGTGTTGTAGAAAATTTGTCCCTTGGCAAACTGTTTCCAGAAGGTTTTAAACTTCTTGGTGTTTTAGATTATCAAGATACACCTTTGAAGAAGTTTCCTGTAGCAGTTGTTGATCAATATCATTTAAGATATCTAAGCTTAAGGAATACAAAGGTGAAAATGGTTCCAAGTCATATAATAGGAAAGTTGCATAATCTAGAAACACTGGATCTTAAGGAGACTTGTGTCAGAGAATTGCCTGTAGATATACTAAAGCTTCAAAAGCTTCGCCATCTCCTTGTCTATCGGTCTAAAGTCAAAGGCTATGCACAGTTCTACTCCAAACATGGTTTTAAGGCCCCCACTGAAATAGGAAATTTACAGTCACTACAAAAGCTTTGTTTTGTGGAGGCAAACCATGACTGTGGCATGATAATAAGGCAGTTGGGGAAGCTAAGTCAACTGAGAAGGTTAGGCATCTTGAAACTTAGAGAGGAAGATGGGAAGGCTTTCTGTTTATCCATTGAGAGATTAACTAACCTTCATGCCCTCTCTGTAACTTCTGAGGGTGAGAATAAGGTCATTGATCTGACATTCCTTTCTTCACCCCCTCCATTTCTTCAACGTTTGTATTTGTCAGGGTGTCTACAAGAGTTACCAAGTTGGATACAGTCTCTTCATAGCCTGACCAGGTTATTCCTGAAATGGAGCTGTTTAAAATATGATCCACTAGTGTATCTGCAGGATCTGCCAAACCTTGCACATCTTGAACTACTTCAAGTTTATGATGGTGACACACTGCATTTTAGGTGTGGAAAGTTCAAGAAGCTCAAGGTTTTAGGCCTTGGCAAATTTGATGGACTCAAACAGGTGATAGTGGGGAAGGATGCAATGCCTTGCCTAGAAAGGCTGAGCATTGGTCGTTGTGAATTGTTGAAGAAAGTGCCATCAGGTATTGAGCACTTGACTAAGCTCAAAGTCCTTGAGTTTTTTGATATGCCAGATGAACTGATCAAGACAATATGTCCACATGGTCCAGGAAAAGATCACTTCAAAGTCTCACATATTCCAGATGTTTACTCTACTTACTGGAGAGATGGTGGTTGGGATGTTTATTCTGTAGACAGTTTCAGCAGAGATTGTTGTCCCCGATCTGGCACTGTCATGAGAAGTCATGAACCCCGCATTCAGTGGAAGCTGTAG 2835 0.4131 MAESAVGFLLERLAPVFDNKVTLFGEVQAEVLCLKGRLELIKAFLRAADALEESDEELKVWVKQVRDVAHEAEDLLDELELVQVNNHANGLSIYLRVRNMKARYRIAHELKSINSRMKTISSTDKRFLSKLHTPSEASSSNYTGAWHDQRGDALLLDNTDLVGIDRPKKKLIGWLMKGCPGRKVISVTGMGGMGKTTLVKQAYDDPEVRKHFKACVWVTVSQSCKVEELLRDLAQKLFSEIRRPIPEGLESMCSDKLKMIIKDLLQRKKYLVVFDDVWHMYEWEAVKYALPNNNCGSRIMITTRKSDLASISSIESNGKVYNLHPLKEDEAWDLFCRNTFQGHSCPSYLMDICKYILRKCGGLPLAIVAISGVLATKDKRRIDEWDMICRSLGAEIQGNGKLDNFKTVFNLSFNDLPYHLKYCFLYLSIFPEDYLIQRMRVIRLWIAEGFIEAKEGKTMEDVANDYLKELLNRNLIQVAETTSDGRVKTLRIHDLLREIIILKSKDQNFASIVKEQSVAWPEKIRRLSVHGRLPYRQQHRSASQLRSLFMFGVVENLSLGKLFPEGFKLLGVLDYQDTPLKKFPVAVVDQYHLRYLSLRNTKVKMVPSHIIGKLHNLETLDLKETCVRELPVDILKLQKLRHLLVYRSKVKGYAQFYSKHGFKAPTEIGNLQSLQKLCFVEANHDCGMIIRQLGKLSQLRRLGILKLREEDGKAFCLSIERLTNLHALSVTSEGENKVIDLTFLSSPPPFLQRLYLSGCLQELPSWIQSLHSLTRLFLKWSCLKYDPLVYLQDLPNLAHLELLQVYDGDTLHFRCGKFKKLKVLGLGKFDGLKQVIVGKDAMPCLERLSIGRCELLKKVPSGIEHLTKLKVLEFFDMPDELIKTICPHGPGKDHFKVSHIPDVYSTYWRDGGWDVYSVDSFSRDCCPRSGTVMRSHEPRIQWKL 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01028 944 Gene3D - 325 412 IPR042197 -
Cca06g01028 944 SUPERFAMILY L domain-like 492 879 - -
Cca06g01028 944 PANTHER DISEASE RESISTANCE PROTEIN RP 154 908 IPR044974 GO:0006952
Cca06g01028 944 PANTHER DISEASE RESISTANCE PROTEIN RP 1 130 IPR044974 GO:0006952
Cca06g01028 944 Gene3D Ribonuclease Inhibitor 536 892 IPR032675 -
Cca06g01028 944 Gene3D - 4 123 - -
Cca06g01028 944 Pfam Rx N-terminal domain 5 87 IPR041118 -
Cca06g01028 944 PANTHER OS08G0539900 PROTEIN 1 130 - -
Cca06g01028 944 PANTHER OS08G0539900 PROTEIN 154 908 - -
Cca06g01028 944 Gene3D - 413 503 IPR036388 -
Cca06g01028 944 PRINTS Disease resistance protein signature 184 199 - -
Cca06g01028 944 PRINTS Disease resistance protein signature 264 278 - -
Cca06g01028 944 PRINTS Disease resistance protein signature 360 374 - -
Cca06g01028 944 PRINTS Disease resistance protein signature 612 628 - -
Cca06g01028 944 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 427 IPR027417 -
Cca06g01028 944 Coils Coil 62 82 - -
Cca06g01028 944 CDD RX-CC_like 2 122 IPR038005 -
Cca06g01028 944 Pfam NB-ARC domain 167 413 IPR002182 GO:0043531
Cca06g01028 944 Gene3D - 155 316 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01028 Cca-Chr6 24284951 24288872 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01028 157 876 WRKY Transcription Factor Family AT4G12020 22.672 2.36e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01028 K13457 - gmx:100805346 1655.19