Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01018 ATGGGTTACGAAGACGATCCGTACCGCGACGAGGACGGTGAGCCTTTGATGGACTATGACGACGTTCAATCCGACCGTGAGCCCTCTCCGGAGCCGCAGCACCAGCTCGACGATTTGGAGGAGGACGTTGACGAGTGGCGCGGCCGCGATCGGTCGCAGACGCCGGTGTATGATAACGAGGCGTCGCGGTCGAAGCCGAGGAAGAGGCTGATCAAGAAGAGCGACGCCGGGAAGCAGGCGGTGGCGCCGGAGCTGgaggacgaggacgaggaggggtatgtgccggtgagcgtggaggagggagaggggaggaagaggaagaaggggaaggagggtgggagtgggaagaaggagaagaggatgaagggggagaAGAGGTTTGGGAGCGGTGGCGCTGGGAAGGGTGGGTCCAAATTTGGGGGTTCCAAGAAAGGTTTTGGTGGGAAGGCGGGGAAGGATCATGATGGTGAGGTTAAGGAGATGTGGGATACGATTGCTGGGGGAGATTCTGAGGATGATCAGGAGGGTGTCAGGAATATGGATGATGACAACTTTATAGATGACACCGGAGTGGAACATGGTTATTATGCTAGTGATAATGAACCACGGTCCCCTGGTGATGCTCCCCAGGCTGAGGAAGGTGAAGAGGATGAAGAAATTAAGGATCTTTTCAAGATAGGCaagaaaaagaagaagaatgagagaagCCCTGCTGAAATAGCTTTACTAGTTGAGAATGTCATGGCTGAGCTTGAGGTTACAGCTGAGGAAGATGCTGAGCTTAATAGACAGGGGAAGCCTGCCATTAATAAACTCAAGAAGTTGCCTCTTCTTACGGAAGTTCTCTCAAAGAAACAGCTTCAGCTAGAGTTTTTAGATCATGGAGTGCTAACTTTATTGAAGAATTGGCTTGAGCCACTTCCTGATGGAAGCTTGCCAAATATCAATATACGCACAGAAATTTTGAAGATTTTGAACGATTTTCCTATAGACCTAGAGCAGTATGATAGAAGAGAACAGCTGAAGAAGAGTGGTCTTGGAAAGGTAATTATGTTTTTATCAAAGTCCGATGAAGAAATCAATGTAAATAGGAAACTAGCCAAGGAGCTGGTTGATAAGTGGAGCCGGCCTATATTTAATAAGAGTACTCGGTTTGAAGACATGAGGAGTATGGAAGATGATAGGGCTCCTTTTAGGAGGCCATCAGTTAAAAAGCCAACAAATAAAGCTGCTGGAATGGAATCTAGAGATAGCGATCTTGATTTGGAACTTTCACAGCCTAGGGCTGGACAGTCCTCTTCCAGGCAGCATGCATCAAGGCCAGAAGCAACACCTTTGGATTTTGTGATCCGTCCCCAATCTAAAATTGATCCAGAAGAAATCAGAGCACGAGCAAAACAAGCTGCCCAAGATCAGCAGCGTATGAAGATGAATAAGAAATTACAGCAATTGAGGGCACCAAAAAAGAGACAGCTTCAGGCTACAAAATTGAGTGTGGAAGGTCGTGGGTGGATCGATGAGCTTCCTTGTTGGCCTATAAATTTCTTTTCTCCCCCGAACCCGCACTCATTCTCACTTGCACTCTCCTTGCATCTTGGTTGCTGA 1605 0.4343 MGYEDDPYRDEDGEPLMDYDDVQSDREPSPEPQHQLDDLEEDVDEWRGRDRSQTPVYDNEASRSKPRKRLIKKSDAGKQAVAPELEDEDEEGYVPVSVEEGEGRKRKKGKEGGSGKKEKRMKGEKRFGSGGAGKGGSKFGGSKKGFGGKAGKDHDGEVKEMWDTIAGGDSEDDQEGVRNMDDDNFIDDTGVEHGYYASDNEPRSPGDAPQAEEGEEDEEIKDLFKIGKKKKKNERSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLPLLTEVLSKKQLQLEFLDHGVLTLLKNWLEPLPDGSLPNINIRTEILKILNDFPIDLEQYDRREQLKKSGLGKVIMFLSKSDEEINVNRKLAKELVDKWSRPIFNKSTRFEDMRSMEDDRAPFRRPSVKKPTNKAAGMESRDSDLDLELSQPRAGQSSSRQHASRPEATPLDFVIRPQSKIDPEEIRARAKQAAQDQQRMKMNKKLQQLRAPKKRQLQATKLSVEGRGWIDELPCWPINFFSPPNPHSFSLALSLHLGC 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01018 534 PANTHER PROTEIN IWS1 HOMOLOG 1 1 506 IPR044204 GO:0009742|GO:0032784
Cca06g01018 534 MobiDBLite consensus disorder prediction 389 451 - -
Cca06g01018 534 ProSiteProfiles TFIIS N-terminal domain profile. 298 381 IPR017923 -
Cca06g01018 534 MobiDBLite consensus disorder prediction 1 18 - -
Cca06g01018 534 PANTHER PROTEIN IWS1 HOMOLOG 1 1 506 - -
Cca06g01018 534 Coils Coil 244 264 - -
Cca06g01018 534 MobiDBLite consensus disorder prediction 97 127 - -
Cca06g01018 534 MobiDBLite consensus disorder prediction 19 65 - -
Cca06g01018 534 Pfam TFIIS helical bundle-like domain 323 378 IPR017923 -
Cca06g01018 534 MobiDBLite consensus disorder prediction 1 219 - -
Cca06g01018 534 MobiDBLite consensus disorder prediction 425 440 - -
Cca06g01018 534 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 237 384 IPR035441 -
Cca06g01018 534 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 293 381 IPR035441 -
Cca06g01018 534 MobiDBLite consensus disorder prediction 147 189 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Cca06g01018 Med26 1.9e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01018 K17498 - gmx:100801805 820.846