Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01005 ATGGGCAGCAGTGAGATGGATAAAGCCCCAAAAGAGAAGGAGTCAAAGACACCGCCACCTACGTCACAGGAGCAGTCTTCGACCACTGGCACTGGAACAATTAATCCTGACTGGCCTGGCTTTCAGGCATACTCTCCTATACCTCCCCATGGTTTCTTGGCATCGAGTCCCCAGGCCCACCCTTATATGTGGGGTGTCCAGCATATTATGCCTCCCTATGGTACTCCACCACATCCTTATGTTGCAATGTATCCCCCTGGTGGCATTTATGCTCATCCATCCATGCCTCCGGGATCTTATCCTTTTAGTCCTTTTGCCATGCCTTCTCCAAATGGCGTTGCTGAGGCTTCAGGAAACACTCCTGGCAGCATGGAAGCCGACGGTAAGCCTCCTGAGGTGAAGGAAAAGTTGCCAATCAAAAGATCAAAAGGAAGTTTGGGTAGTTTGAATATGATCACAGGGAAAAATAATGAACATGGTAAAACACCGGGGACATCTGCTAATGGAATTCATTCAAAGAGTGGTGAGAGTGCAAGTGAAGGTACTAGTGAAGGAAGTGATGCAAATTCTCAAAATGACTCTCAATTGAAATCAGGGGGCAGGCAGGATTCTTTTGAAGATGAACCATCTCAAAATGGCAGTTCAGCATATACTCCTCAAAATGGGGGACTAAATACACCTCATACGGTGGTCAATCAAACTATGTCTATCATGCCTATCTCTGCAGGTGGAGCTCCTGGAGCTGTTCCTGGTCCCACAACTAACTTAAATATAGGAATGGATTATTGGGGTACACCAGCTTCATCCAACATTCCTGCACTTGCCAGGAAGGTTCCATCAACTGCGGTTGCTGGAGGGATGGTTACTACTGCTGGATCACGAGATAGTGTTCAGTCACAACTCTGGCTACAGGATGAAAGGGAGCTTAAAAGGCAAAGGCGGAAGCAGTCTAACAGGGAATCTGCTCGCAGATCCAGGTTGCGTAAGCAGGCCGAGTGTGATGAGTTAGCTCAGCGCGCTGAGGCTTTGAAGGAAGAAAATGCTTCTCTTCGGTCAGAAGTAAGTAGAATCAGGAGTGAGTATGAGCAGCTACTCTCCGAGAATGCAGCTCTCAAGGAGAGACTTGGGGAACAACCTGCTAAAGATGAACGTAGGTCTGGCCGGAACGATCCGCATGTGGGTAGTGACACTCAACAGAGTGGGCAGACAGAGGCTGTGCAGGGTGGTCATTAG 1233 0.4842 MGSSEMDKAPKEKESKTPPPTSQEQSSTTGTGTINPDWPGFQAYSPIPPHGFLASSPQAHPYMWGVQHIMPPYGTPPHPYVAMYPPGGIYAHPSMPPGSYPFSPFAMPSPNGVAEASGNTPGSMEADGKPPEVKEKLPIKRSKGSLGSLNMITGKNNEHGKTPGTSANGIHSKSGESASEGTSEGSDANSQNDSQLKSGGRQDSFEDEPSQNGSSAYTPQNGGLNTPHTVVNQTMSIMPISAGGAPGAVPGPTTNLNIGMDYWGTPASSNIPALARKVPSTAVAGGMVTTAGSRDSVQSQLWLQDERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEALKEENASLRSEVSRIRSEYEQLLSENAALKERLGEQPAKDERRSGRNDPHVGSDTQQSGQTEAVQGGH 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01005 410 PANTHER BZIP TRANSCRIPTION FACTOR FAMILY PROTEIN 1 410 - -
Cca06g01005 410 Gene3D - 309 363 - -
Cca06g01005 410 MobiDBLite consensus disorder prediction 392 410 - -
Cca06g01005 410 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 308 371 IPR004827 GO:0003700|GO:0006355
Cca06g01005 410 MobiDBLite consensus disorder prediction 1 43 - -
Cca06g01005 410 Pfam G-box binding protein MFMR 1 96 IPR012900 -
Cca06g01005 410 MobiDBLite consensus disorder prediction 1 18 - -
Cca06g01005 410 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 313 328 IPR004827 GO:0003700|GO:0006355
Cca06g01005 410 Coils Coil 326 374 - -
Cca06g01005 410 CDD bZIP_plant_GBF1 311 361 IPR045314 GO:0003700|GO:0006355
Cca06g01005 410 Pfam Disordered region downstream of MFMR 135 272 - -
Cca06g01005 410 MobiDBLite consensus disorder prediction 19 38 - -
Cca06g01005 410 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 410 IPR044827 GO:0003700|GO:0006355|GO:0043565
Cca06g01005 410 MobiDBLite consensus disorder prediction 369 410 - -
Cca06g01005 410 MobiDBLite consensus disorder prediction 374 391 - -
Cca06g01005 410 SMART brlzneu 306 370 IPR004827 GO:0003700|GO:0006355
Cca06g01005 410 MobiDBLite consensus disorder prediction 111 229 - -
Cca06g01005 410 MobiDBLite consensus disorder prediction 146 229 - -
Cca06g01005 410 SUPERFAMILY Leucine zipper domain 309 365 IPR046347 GO:0003700|GO:0006355
Cca06g01005 410 MobiDBLite consensus disorder prediction 307 332 - -
Cca06g01005 410 Pfam bZIP transcription factor 306 368 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01005 Cca-Chr6 23865623 23876773 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01005 1 404 bZIP Transcription Factor Family AT2G35530 64.720 1.19e-169 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Cca06g01005 MFMR_assoc 9.9e-63 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01005 K09060 - gmx:778122 730.709