Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01004 atGGCGCCACCAccggaccctgacgccgaagccgaagcggaagcGCTGCGCCTCAAGGCCACGGCGGAGTCAAAGTTCAAAGCCACCAACAACGCCAAGTCCGCTCTCAAATACGCCAAGCGCGCCCAGCGTCTCTGCCCGCACCTCGCCGGCGTGTCGGAGACCGTCACTTCCCTCACCGTCCTCGCCGCGCCGGACTGGTACCGAGTCCTCGGCGCGGAGCCCTTCGCCAACACCACCGTCATTCGGAGGCAGTACAAGAAGCTCGCCCTGCTCCTCCACCCTGACAAGAACCCCCACGTGGCCTCCGAGGAAGCCTTCAAGCTCGTCGGCGAGGCCTTCCACCTCCTCTCCGACCGCGCTCGCCGCGGAGAGTACGACGCCGAGCTCCGCCGCAAGATCGAGGCGGAGCGCGATACCTTCTGGACCTCTTGCTCCACTTGCAGGCTTCTGCACCAGTTCGAGAGAAGGTACTTAGGTGATGAATTGGTTTGCCCTAGTTGTGAGAAGAGTTTTAGGGCTGTGGAAACGGTTCAGAGTGATGGGGATGGTAGGGTTATGAGTAGGAGTAGGAGGTTGAAGGAGATAGATAAGAAGAAAAATGAGGTGAAAGGGAAAGTGGGTAGTGAAAAAGGTAGTAATGTAGTGGGGAATGAGAAGGAAGGGAAGTTGAGGAAGAGAATGCGTTCAGTTGGGGAGGTTTTGGAGAGGTCCAAACCTAGTAAGAGGGCTAAAACTGGGGAGGAGATGATGACATTGGCCGAATTTCAGAATGAGGTgaagaggaaaaagttgaaggaaaaggaaaaggaaagggaggagttggaggaggaggaCAGAATTGAGAAGAGGAACAACCGTGCTGAGAGGCGGCGGAGAATGAAAAACAATGGAGGTTTAGAGGTTGGGGAAGAGAGGGGTTTGAAGAAGAGTGTGGAGATTGCTATTGAGGAGAAGAGAAAGGGGTTGGGGATTGAGAAGCATAAGGGTTGTAGTGGAGGGGAATTGGAGAATATGGCGGTGGTGGATTCTGATTTTTATGATTTTGACAAGGATAGAGTGGAGAGAAGCTTTAAGAAAGGTCAAGTGTGGGCGGTGTATGAAGATGACGATGGAATGGCCAGGCAGTATGTCTTAATTGATGAAACTGTTTCAGTGAATCCTTTTGAAGTGAAAATAAGTTGGTTGGATGTACAGAGCAGTGGGGATGGGAAGATAGCTAGTAGGGAGAGGATGAGGCTTCATGTGCCTTGTGGGATATTTAAGGTTGCCAGGAAGGCTTCTGTAAATCTAGTAAATATCTTTTCTCATGTTGTGGATTGTGATAGGGCAGCACGTGAGGTTTACAAAATTTACCCCAAGAAGGGCTCGGTATGGGCGCTTTATGGCGAGGAAAGTATTGATGCAGATGGAAGGAATGCTGAGAATGCGGGCAAGAGATGCTATGAGATTGTTGTATTCTTGACAAGTTACAGTGAGGTGAATGGTCTGAGCATGGCGTATCTTGAGAAGGTTGATGGTTACAAGACAGTATTTAAGAGACAAGAGAAGGGGTGTAGTGCTGTTAGATTTCTTGGAAAGGATGACATGTGGTTAGTTTCTCATCAGATCCCTGCGCGGAAGTTACTTTGTGATGAAACTCCCGAACTGTTGAAAGACTGTTGGGAACTTGATCCTGCTTCTCTTCCTTCAGATTTACTTACTATTGATGGCATAGACAATTGA 1725 0.4725 MAPPPDPDAEAEAEALRLKATAESKFKATNNAKSALKYAKRAQRLCPHLAGVSETVTSLTVLAAPDWYRVLGAEPFANTTVIRRQYKKLALLLHPDKNPHVASEEAFKLVGEAFHLLSDRARRGEYDAELRRKIEAERDTFWTSCSTCRLLHQFERRYLGDELVCPSCEKSFRAVETVQSDGDGRVMSRSRRLKEIDKKKNEVKGKVGSEKGSNVVGNEKEGKLRKRMRSVGEVLERSKPSKRAKTGEEMMTLAEFQNEVKRKKLKEKEKEREELEEEDRIEKRNNRAERRRRMKNNGGLEVGEERGLKKSVEIAIEEKRKGLGIEKHKGCSGGELENMAVVDSDFYDFDKDRVERSFKKGQVWAVYEDDDGMARQYVLIDETVSVNPFEVKISWLDVQSSGDGKIASRERMRLHVPCGIFKVARKASVNLVNIFSHVVDCDRAAREVYKIYPKKGSVWALYGEESIDADGRNAENAGKRCYEIVVFLTSYSEVNGLSMAYLEKVDGYKTVFKRQEKGCSAVRFLGKDDMWLVSHQIPARKLLCDETPELLKDCWELDPASLPSDLLTIDGIDN 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01004 574 PRINTS DnaJ domain signature 68 86 IPR001623 -
Cca06g01004 574 PRINTS DnaJ domain signature 86 101 IPR001623 -
Cca06g01004 574 PRINTS DnaJ domain signature 102 122 IPR001623 -
Cca06g01004 574 Coils Coil 253 292 - -
Cca06g01004 574 SMART dnaj_3 65 122 IPR001623 -
Cca06g01004 574 CDD DnaJ 66 119 IPR001623 -
Cca06g01004 574 PANTHER BNAC03G44070D PROTEIN 12 570 - -
Cca06g01004 574 ProSiteProfiles dnaJ domain profile. 66 130 IPR001623 -
Cca06g01004 574 MobiDBLite consensus disorder prediction 222 248 - -
Cca06g01004 574 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 12 570 - -
Cca06g01004 574 SUPERFAMILY Chaperone J-domain 58 130 IPR036869 -
Cca06g01004 574 Gene3D DnaJ domain 52 147 IPR036869 -
Cca06g01004 574 Pfam DnaJ domain 66 127 IPR001623 -
Cca06g01004 574 Pfam Domain of unknown function (DUF3444) 338 543 IPR024593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01004 Cca-Chr6 23862352 23864415 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01004 13 179 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 28.426 2.69e-20 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01004 - - gmx:100814434 832.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01004 06 23862352 23864415 Cca06g01004 06 23862352 23864415 ECH