Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00996 ATGTATGGGGATTGCCAAGTTATGTCAAGTATGGGAGGGAACACAGATAACCTCTTCTCCTCCTCGATCCAGAACTCCAACTTCAACTTCATCCCCACCATGCCTTTTCAACCTTTTCCTTCTTTGAAGGAAGAGGACGTGTTACTGCGAGGGAAGGAAGAGATGGAGAGTGGTTCAGGAAGTGAGCAAGTTGAAGACAAGTCGGGGAACGAGCAAGAGAGTGAACAGCCATCGAAGAAGAAACGTTATCACAGGCACACCGCTCGCCAGATCCAAGAAATGGAAGCGTTGTTCAAGGAATGCCCGCACCCAGATGATAAGCAGAGGCTGAAACTGAGCCATGATTTGGGGCTTAAACCGCGCCAGGTCAAGTTCTGGTTCCAGAACCGTCGAACCCAGATGAAGGCGCAACAAGACCGGGCAGATAATGTGATACTTAGAGCCGAAAATGAGACTCTAAAGAGTGAGAACTATCGGTTACAAGCAGCACTGCGTAATGTTATGTGTCCCAATTGTGGTGGACCATGCATAATGGGAGCTGATCTGGGCTTGGATGAACACCAACTTCGCATTGAAAATGCTCGGTTAAGAGAAGAGCTAGAACGCATGTGTTGTCTCACTTCAAGATACAGTGGGCGTTCAATCCAAACAATGGGAGCAGGCCCTACTCTTATGGCTCCATCACTGGATTTGGACATGAACATATACCCAAGGCATTTTGCGGATTCTATTGCTCCATCCACAGAAATGATTCCTGTGCCGATGTTGCCACCCGAAGCTTCGCCATTTGCTGAGAGTGGTGTACTAATGGAAGAAGAGAAGTCTTTGGCATTGGACCTTGCCGCTTCTTCCATGGCTGAACTTGTCAAGATGTGTCAAACAAACGAGCCACTTTGGATCCGAAGCAGTGAGAGTGAAAGGGAAGTGCTCAATTTTGAAGAGCACGCGAGGATGTTTACTTGGCCTCAGAATCTTAAGCACCGAAGTGAACTGAGGACAGAAGCTACCCGTGATTCTGCTGTGGTTATAATGAATAGTGTCACTCTTGTTGATGCTTTCCTTGATGCTCAAAAATGGATGGAATTGTTTCCTACAATCGTTTCCAGAGCAAAAACTGTCCAAATCATATCTTCTGGTGCTTCTGGTCATGCAAGCGGGACTCTTCAGCTGATGTACGCAGAATTCCAAGTTCTTTCTCCTTTGGTGTCCACTCGTGAGACTCATTTTCTTCGGTATTGTCAACAAAATGCTGAGGAGGGAACCTGGGCCATTGTTGATTTTCCTGTTGATAGCTTTCAACAAAATTTCCACCCTTCTTACCCCAGATACTGCATCAGGTCCTCTGGCTGTGTGATTCAAGATATGCCAAATGGGTATTCAAGGGTAACATGGGTCGAGCATGCAAAAGTAGAAGAAAAACCTGTGCATCAGATATTTTGCAACTATGTGTACACTGGAATGGCATTCGGAGCACAACGTTGGTTAGGTGTTTTGCAAAGACAATGCGAGAGGGTCGCTAGCCTCATGGCCAGAAACATATCAGATCTTGGAGTGATACCTTCACCAGAAGCGCGAAAGAACATGATGAAACTGGCCCAAAGAATGATAAAAACATTTGGCCTTAACATGAGCACCTCTGGTGGTCAATCATGGACGGCCATATCAGATTCTCCTGAAGACACTGTTAGAATCACAACTAGGAAAGTCACAGAGCCTGGCCAACCTAATGGCGTGATTCTAAGTGCCGTTTCAACCACTTGGTTGCCGTATTCTCACACCAGGGTCTTTGATCTCCTTAGGGACGAACGTCACAGATCTCAGATGGATGCTCTTTCCAACGGGAACTCGTTGAATGAAGTGGCTCATATTGCAAATGGCTCACATCCAGGAAACTGCATTTCCCTTCTTCGCATAAATGTAGCAAGCAACTCATCCCAGAACGTGGAGCTAATGCTGCAAGAGAGTTGCACCGATCAATCTGGAAGCTTAGTAGTGTACACCACCATTGATGTGGATTCCATCCAGCTAGCCATGAGTGGCGAGGACCCCTCTTGCATTGCCCTTCTTCCCCAAGGCTTCATGATAGTGCCAATGATATCATCACCCAACGTTGACACATCCACTGATGCCAATTCATCTGAGGCTCCTCCATCTGTCAATTCAGGTTGCCTCCTCACCATGGGGCTGCAAGTTCTCGCCAGCACAATTCCTTCAGCCAAGCTCAACCTCTCAAGTGTGACAGCCATCAACAACCACCTCTGCAACACCTTGCACCAGATTGAAGCTGCTCTTTCTAGCTCCCATGAGAATAGCACTTTCCTTTGCAATGAACCCGCCACTGGTGCACCTCTCAAACAGTGA 2361 0.471 MYGDCQVMSSMGGNTDNLFSSSIQNSNFNFIPTMPFQPFPSLKEEDVLLRGKEEMESGSGSEQVEDKSGNEQESEQPSKKKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSHDLGLKPRQVKFWFQNRRTQMKAQQDRADNVILRAENETLKSENYRLQAALRNVMCPNCGGPCIMGADLGLDEHQLRIENARLREELERMCCLTSRYSGRSIQTMGAGPTLMAPSLDLDMNIYPRHFADSIAPSTEMIPVPMLPPEASPFAESGVLMEEEKSLALDLAASSMAELVKMCQTNEPLWIRSSESEREVLNFEEHARMFTWPQNLKHRSELRTEATRDSAVVIMNSVTLVDAFLDAQKWMELFPTIVSRAKTVQIISSGASGHASGTLQLMYAEFQVLSPLVSTRETHFLRYCQQNAEEGTWAIVDFPVDSFQQNFHPSYPRYCIRSSGCVIQDMPNGYSRVTWVEHAKVEEKPVHQIFCNYVYTGMAFGAQRWLGVLQRQCERVASLMARNISDLGVIPSPEARKNMMKLAQRMIKTFGLNMSTSGGQSWTAISDSPEDTVRITTRKVTEPGQPNGVILSAVSTTWLPYSHTRVFDLLRDERHRSQMDALSNGNSLNEVAHIANGSHPGNCISLLRINVASNSSQNVELMLQESCTDQSGSLVVYTTIDVDSIQLAMSGEDPSCIALLPQGFMIVPMISSPNVDTSTDANSSEAPPSVNSGCLLTMGLQVLASTIPSAKLNLSSVTAINNHLCNTLHQIEAALSSSHENSTFLCNEPATGAPLKQ 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00996 786 SUPERFAMILY Homeodomain-like 71 138 IPR009057 -
Cca06g00996 786 MobiDBLite consensus disorder prediction 52 80 - -
Cca06g00996 786 SUPERFAMILY Bet v1-like 271 506 - -
Cca06g00996 786 Pfam Homeodomain 80 135 IPR001356 GO:0003677
Cca06g00996 786 SMART HOX_1 78 141 IPR001356 GO:0003677
Cca06g00996 786 MobiDBLite consensus disorder prediction 52 88 - -
Cca06g00996 786 Gene3D - 280 488 IPR023393 -
Cca06g00996 786 SMART START_1 279 504 IPR002913 GO:0008289
Cca06g00996 786 ProSitePatterns 'Homeobox' domain signature. 112 135 IPR017970 GO:0000981|GO:0006355
Cca06g00996 786 Gene3D - 65 148 - -
Cca06g00996 786 SUPERFAMILY Bet v1-like 522 761 - -
Cca06g00996 786 Pfam START domain 280 504 IPR002913 GO:0008289
Cca06g00996 786 ProSiteProfiles 'Homeobox' domain profile. 77 137 IPR001356 GO:0003677
Cca06g00996 786 ProSiteProfiles START domain profile. 270 507 IPR002913 GO:0008289
Cca06g00996 786 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 69 772 IPR042160 -
Cca06g00996 786 CDD homeodomain 80 138 IPR001356 GO:0003677
Cca06g00996 786 CDD START_ArGLABRA2_like 274 503 - -
Cca06g00996 786 PANTHER - 69 772 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00996 Cca-Chr6 23728252 23734812 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00996 22 767 Homeobox Transcription Factor Family AT5G46880 57.428 0.0 851
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Cca06g00996 START 1.6e-40 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00996 - - gmx:100812829 1402.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00996 06 23728252 23734812 Cca06g00996 06 23728252 23734812 ECH
Cca06g00996 06 23728252 23734812 Cca02g02283 02 43369206 43374992 ECH
Cca06g00996 06 23728252 23734812 Cca08g00614 08 10882654 10887480 ECH