Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00995 ATGATGCTCTACGTTGATACCCCTTTGGTTCACTTGAATAATGACCAGGTGGAAAGAAGAGTGACTTTGTCTAAAGAAGTTAGAAATGGGTTAGAATTTCTGAGGCGTAAAAGGCTTCAGCGTGCAAAATCTGTCACTTCCACCCAGACAAATATTGCTAACATGATGAACAGAAGTGGAGGAGATGCTTTAAGAGCTTCAACATCATGTGGCATGAGATTGCATGGTAATGCTGATGTCTTTTCCAAGCGCAAGGTGGATAAGTTTGATACAAATGACCTGGAATGGACTGATAAAATTCAAGATTGTCCTGTGTATTCTCCAACCAAGGAGGAATTTGAGGATCCTTTGATTTATTTGCAGAAGATAGCTCCAGAAGCTTCTAAATATGGTATTTGCAAGATTATATCTCCTTTGAGTGCTTCAGTACCTGCTGGTGTTGTTTTAATGAAGGAGAAAGCAGGATTCAAGTTTACAACTAGAGTGCAGCCGCTTCGCCTTGCTGAATGGGATACTGAAGACAAAGTCACATTCTTTATGAGCGGAAGAACTTATACATTTCGCGATTTTGAGAAAATGGCAAACAAGGTATTTGCACAAAGATATTGCAGTGCTGGAAGTCTTCCTGCCACATACTTGGAAAAAGAGTTTTGGCATGAAATTAGCTGTGGGAAGATGGAATCTGTTGAATATGCGTGTGATGTTGATGGAAGTGCCTTTTCATCTTCTCCCACTGACCAGCTTGGGACCAGCAAATGGAATTTGAAGAAACTTTCAAGGTTGTCCAAATCAATTTTACGGCTCTTGGAAACATCAATTCCGGGAGTTACGGAACCCATGCTATACATTGGAATGCTGTTTAGTATGTTCGCTTGGCATGTGGAAGATCATTATTTGTACAGCATTAACTATCACCATTGTGGGGCATCAAAAACATGGTACGGTATTCCAGGTCATGCAGCTTTGGATTTTGAAAGGGTGGTGAGAGAACATGTGTACACTAATGATATTTTGTCAAGTGATGGGGAAGATGGAGCCTTTGATGTTCTCCTGGGGAAAACAACACTATTTCCACCAAATATTTTATTGGAGCATGAAGTTCCTGTCTACAAGGCTGTTCAAAAGCCAGGGGAGTTTGTAATAACCTTCCCTAGGGCATATCATGCTGGCTTCAGTCATGGTTTCAACTGTGGAGAAGCAGTGAATTTTGCCATTGGTGACTGGTTTCCTTTAGGAGCTATTGCTAGCAGAAGATATGCTCTTCTTAACAGGCTTCCTTTACTGCCCCATGAAGAACTTCTATGCAAAGAAGCAATGCTTCTTCATACATGCTTGGAACTTGAAGATTCAGACCTTCCCTCTTCAGACTTGTTTTCGCAAAATAGCATTAAGGTTTCATTTGCTAACTTGATGCGTTTCCAGCATTGTGCTCGGTGGTTCTTGATGAAATCAAGGTCATGTATAGGCGTCTCTGCTCATAACCATGGCACCATTCTCTGTAGCCTATGCAAACGTGATTGTTACATAGCTTACGTTGACTGCAACTGTCACATGCATCCTGTATGCCTACGTCATGATGTTGATTCTCTTGACTTCATCTGTGGGGGCAAGCATACACTTTATTTGAGGGAGGATATTATGGATATGGAAACTGCAGCCAAGATGTTTGAGCAGGAAGATGAAATATTGGATGAGATAAGTGACCAAAACATGTATGCATATCCTTTGTCAAATATGTTTCAGAGAGCCAAGGCACATGGATACACACCTTATTGTGAGCTAAAACTTGATTCTGTAATTGAATTTTATACAACTCCAGAGCACTCAACAAATAATCAAGAGTGCAGTACGCAAAGTCAATCTGGCTTGGGACATTGCTCTGAAAATCATAAACCAGTGGTGTCTGAGGTTTCCTTTTCTTCTGCCACATCCACTCTTTGCTCTCTTTCAGAATCTCTTGAGAGCTTTTCTGCTCCCAAAAATGCTGAGGGGCACACTAACATCAATTTAGGTATCATTGATTTTGAAATGTGTGGTGAAAGAATATCCAACAATGCATGTGAATCTTCATTATCCCCTGCTGTGTTTCATGAAAGCTCAGTTAAACCGCAGGGTGAGTTTCAGAGATTTGATACAAAACCCGTTGTGGACGAGAGTGATGATTCTGATTCAGAGATATTTAGGGTAAAACGCCCTTCTTCTCTGAAAGCAGAGAGGAGAAATATGAATGATGCTAACATGTCTTCAAAGCATACTGAGCAGCAGGGATTTAAACGATTGAAGAAAATCCTTCCTGAAGGAAAGAGCGGGCAAGGGCAACCAATGGATTTGAGCAGAAGCAATGAATCAAGTTACAAATACAGTCATAAGGGTCATGTTGAAATATCCTCGAGGGACAAATTTGCAAGGGGTAATGGCAATCCCATTTCTGTAAGATATAAGAAGTTAAGCAACGAGGAGCAACGGAGAGATAGGTTGCAGCAGAGTTCTAGGGAAGCGGCTTCCAGTGAGATTGGGGCAAAGCGCCTTAAGGTCCGAGGCCCTTCATTTTTAGGTTTAGAGAGCAGATCGAATTGA 2577 0.4129 MMLYVDTPLVHLNNDQVERRVTLSKEVRNGLEFLRRKRLQRAKSVTSTQTNIANMMNRSGGDALRASTSCGMRLHGNADVFSKRKVDKFDTNDLEWTDKIQDCPVYSPTKEEFEDPLIYLQKIAPEASKYGICKIISPLSASVPAGVVLMKEKAGFKFTTRVQPLRLAEWDTEDKVTFFMSGRTYTFRDFEKMANKVFAQRYCSAGSLPATYLEKEFWHEISCGKMESVEYACDVDGSAFSSSPTDQLGTSKWNLKKLSRLSKSILRLLETSIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYHHCGASKTWYGIPGHAALDFERVVREHVYTNDILSSDGEDGAFDVLLGKTTLFPPNILLEHEVPVYKAVQKPGEFVITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAIASRRYALLNRLPLLPHEELLCKEAMLLHTCLELEDSDLPSSDLFSQNSIKVSFANLMRFQHCARWFLMKSRSCIGVSAHNHGTILCSLCKRDCYIAYVDCNCHMHPVCLRHDVDSLDFICGGKHTLYLREDIMDMETAAKMFEQEDEILDEISDQNMYAYPLSNMFQRAKAHGYTPYCELKLDSVIEFYTTPEHSTNNQECSTQSQSGLGHCSENHKPVVSEVSFSSATSTLCSLSESLESFSAPKNAEGHTNINLGIIDFEMCGERISNNACESSLSPAVFHESSVKPQGEFQRFDTKPVVDESDDSDSEIFRVKRPSSLKAERRNMNDANMSSKHTEQQGFKRLKKILPEGKSGQGQPMDLSRSNESSYKYSHKGHVEISSRDKFARGNGNPISVRYKKLSNEEQRRDRLQQSSREAASSEIGAKRLKVRGPSFLGLESRSN 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00995 858 Pfam JmjC domain, hydroxylase 280 403 IPR003347 -
Cca06g00995 858 SMART cupin_9 247 420 IPR003347 -
Cca06g00995 858 ProSiteProfiles JmjC domain profile. 247 420 IPR003347 -
Cca06g00995 858 Gene3D Cupin 103 455 - -
Cca06g00995 858 MobiDBLite consensus disorder prediction 783 799 - -
Cca06g00995 858 Pfam jmjN domain 104 136 IPR003349 -
Cca06g00995 858 MobiDBLite consensus disorder prediction 732 746 - -
Cca06g00995 858 Pfam C5HC2 zinc finger 500 551 IPR004198 -
Cca06g00995 858 ProSiteProfiles JmjN domain profile. 103 144 IPR003349 -
Cca06g00995 858 MobiDBLite consensus disorder prediction 815 830 - -
Cca06g00995 858 SUPERFAMILY Clavaminate synthase-like 181 436 - -
Cca06g00995 858 PANTHER LYSINE-SPECIFIC DEMETHYLASE 65 854 - -
Cca06g00995 858 SMART JmjN_1 102 143 IPR003349 -
Cca06g00995 858 MobiDBLite consensus disorder prediction 732 858 - -
Cca06g00995 858 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN 65 854 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00995 Cca-Chr6 23701141 23707267 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00995 100 563 JUMONJI Transcription Factor Family AT2G34880 32.717 2.69e-64 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Cca06g00995 JmjC 2e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00995 - - gmx:100798611 1464.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00995 06 23701141 23707267 Cca06g00995 06 23701141 23707267 ECH