Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00994 ATGGAGCTGTTCCCAGCACAACCAGATTTGTCCTTACAAATCAGCCCTCCAAACACCAAACCAACATCAAGTTGGAGGAGAAGCACAGAAGAAGAGATGGATTTGGGGTTCTTGAAGAGAGCTTTGGACTCTAGAAACTCCATAACATCAATGGCCAAACAAGACTCTTGCTTCAACCTCTCACTCTCTAATCCAAAAGCCTCAGACCCCAACCTCATTCACCACTTCCAAAACGGTGCCAAcaacaacaacagcaacagcaacagcaacaacaacCCCTTCCAACCCTTTCAACAAAACCACTACTTCCACCAGCCACTGTTCCAGCCTCAGCACCACCAAAGCCTAAGCCAAGACCTTGGCTTTCTCAGACCCATTAGAGGAATCCCCGTGTACCAAAACcctcctccaataccattcacccaacaccaccaccaccaccaccatcatctccctctagaaccttcctccaccaccccaTCTTCTATTATTTCCAACACAAACTCACCCTCCACCCCTTTCCACTCTCAGGCTCTCATGAGATCAAGGTTCTTGTCACGCTTCCCTGCCAAGCGTAGCATGAGGGCTCCAAGGATGCGTTGGACTTCCACCCTCCATGCTCGCTTTGTTCATGCCGTTGAACTCTTAGGTGGCCACGAAAGGGCCACGCCTAAATCAGTTCTTGAGCTAATGGATGTGAAGGATCTCACTTTAGCACATGTTAAGTCTCATTTACAGATGTACCGGACGGTGAAAACTACAGATAGGGCAGCGGCTTCATCAGGGCAATCGGATGTGTATGATAATGGGTCGTCTGGAGATACTTCCGATGACTTAATGTTTGACATAAAATCCTCAAGAAGATCTGATCTATCCATTAAGCAGGGAAGATCAAGTGTTAATCAAGATAAGGACTATCATGGCCTTTGGGGCAACAATTCCAGGGAAGCTTGGTTGCATGGGAAGACAAAGGCTGATTCTGTTGGAAACGTGCATTCTCTTGAGAAGGAAATGGATCCAAAGTGCCTAAGCTATGAGAGAATATCAGATGGAAGTTCATCCTCAAACCTTTCAGGATCAAGCCCTAAGAAGCCTAATTTGGATTTGGAATTCAGCTTGGGGCAGCCACTTTAA 1134 0.418 MELFPAQPDLSLQISPPNTKPTSSWRRSTEEEMDLGFLKRALDSRNSITSMAKQDSCFNLSLSNPKASDPNLIHHFQNGANNNNSNSNSNNNPFQPFQQNHYFHQPLFQPQHHQSLSQDLGFLRPIRGIPVYQNPPPIPFTQHHHHHHHHLPLEPSSTTPSSIISNTNSPSTPFHSQALMRSRFLSRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGQSDVYDNGSSGDTSDDLMFDIKSSRRSDLSIKQGRSSVNQDKDYHGLWGNNSREAWLHGKTKADSVGNVHSLEKEMDPKCLSYERISDGSSSSNLSGSSPKKPNLDLEFSLGQPL 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00994 377 Gene3D - 196 253 - -
Cca06g00994 377 MobiDBLite consensus disorder prediction 345 377 - -
Cca06g00994 377 MobiDBLite consensus disorder prediction 1 31 - -
Cca06g00994 377 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 197 250 IPR006447 GO:0003677
Cca06g00994 377 MobiDBLite consensus disorder prediction 138 163 - -
Cca06g00994 377 MobiDBLite consensus disorder prediction 255 279 - -
Cca06g00994 377 MobiDBLite consensus disorder prediction 74 98 - -
Cca06g00994 377 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 376 IPR044847 GO:0000976|GO:0006355|GO:0010158
Cca06g00994 377 MobiDBLite consensus disorder prediction 255 280 - -
Cca06g00994 377 MobiDBLite consensus disorder prediction 347 365 - -
Cca06g00994 377 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 376 - -
Cca06g00994 377 SUPERFAMILY Homeodomain-like 194 250 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00994 Cca-Chr6 23663141 23668280 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00994 1 376 G2-like Transcription Factor Family AT4G17695 38.693 1.98e-62 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Cca06g00994 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00994 - - gmx:100798081 613.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00994 06 23663141 23668280 Cca06g00994 06 23663141 23668280 ECH