Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00985 ATGATTCTAAACGCCCGAGGACCACCACGCCCGCCCCAACGTCGCCTCCGCCGGCGACGGGGCCACAGAAAGAACACAGGCCTATGCGTCCTGTCCGGGTCGGGAACCGTCACCAACGTCACTCTCCGTCAACCCTTTGTCACCCCCGACGCCACCGTCACTTTCCACGGCCGCTTTGATGTCCTCTCCCTCTCCGCCACGCTCCTCCTCCACGACTCGCCGGCAATCTCGGTCTCCGCCTTCGCCGTCTCGCTCACCGGCCCACagagagggaagaaacacagaagcaaacattccgaaaaaaaaaattaa 312 0.5609 MILNARGPPRPPQRRLRRRRGHRKNTGLCVLSGSGTVTNVTLRQPFVTPDATVTFHGRFDVLSLSATLLLHDSPAISVSAFAVSLTGPQRGKKHRSKHSEKKN 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00985 103 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED 22 89 - -
Cca06g00985 103 MobiDBLite consensus disorder prediction 1 30 - -
Cca06g00985 103 MobiDBLite consensus disorder prediction 11 25 - -
Cca06g00985 103 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 22 89 IPR014476 GO:0003680
Cca06g00985 103 CDD DUF296 27 89 IPR005175 -
Cca06g00985 103 Pfam Plants and Prokaryotes Conserved (PCC) domain 23 89 IPR005175 -
Cca06g00985 103 SUPERFAMILY AF0104/ALDC/Ptd012-like 26 72 - -
Cca06g00985 103 ProSiteProfiles PPC domain profile profile. 1 103 IPR005175 -
Cca06g00985 103 Gene3D - 21 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00985 Cca-Chr6 23617616 23617927 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00985 23 89 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 57.333 1.13e-16 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00985 - - ccaj:109810856 109.768