Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00981 ATGAGTTTTCAGGACATCGAGACTGGCCGCTCCTTCGCTTCCCGCCGCAACCTCGTCAACGGCAGACAAGACCCCACGCACGCGGTGGCTTCCGGCATATTCCAGATCAACACCGCCGTCTCCACCTTTCAGAGACTCGTCAACACTCTCGGAACCCCCAAAGACACTCCCGAACTCCGCGATAAGCTGCACAAGACGAGACTGCACATTGGACAATTGGTGAAGGATACTTCGGCTAAACTTAAGCAAGCCAGTGAGATTGATCACAATGTTGATGTTAATGCGAATAAGAAGATAGCAGATGCTAAGCTTGCAAAAGATTTTCAGGCGGTGTTGAAAGAGTTTCAGAAGGCGCAGCGTCTTTCAGCCGAGAGGGAAACAGCTTACGCTCCTTTTGTTCCAAAAGCAGCTCTTCCATCCAGCTATACAGCCAACGAAACAGACATTAGTTCTGATAATACTCCAGAACAGCGTGCCCTTCTTGTGGAATCCAGAAGACAGGAGGTATCATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATCATTGAGGAAAGAGATCAAGGCATTCAAGAAATCCAGCAGCAAATTGGTGAAGTAAATGAGATTTTCAAAGATCTTGCTGTGCTTGTCCATGAGCAAGGAACAATGATTGACGATATTGGGTCCAATATTGAGCATTCCCATGCAGCAACCGCACAAGCAAAATCTCAACTTGCCAAAGCTTCAAAGACGCAAAGATCAAATTCATCTTTGACATGCTTGCTTTTGGTGATATTTGGGATCGTGCTTCTAATTGTCATCATTGTCCTTGCTGCTTAG 822 0.4599 MSFQDIETGRSFASRRNLVNGRQDPTHAVASGIFQINTAVSTFQRLVNTLGTPKDTPELRDKLHKTRLHIGQLVKDTSAKLKQASEIDHNVDVNANKKIADAKLAKDFQAVLKEFQKAQRLSAERETAYAPFVPKAALPSSYTANETDISSDNTPEQRALLVESRRQEVSFLDNEIAFNEAIIEERDQGIQEIQQQIGEVNEIFKDLAVLVHEQGTMIDDIGSNIEHSHAATAQAKSQLAKASKTQRSNSSLTCLLLVIFGIVLLIVIIVLAA 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00981 273 Pfam Syntaxin-like protein 30 129 IPR006011 GO:0016020
Cca06g00981 273 SUPERFAMILY t-snare proteins 23 235 IPR010989 GO:0016020|GO:0016192
Cca06g00981 273 SMART tSNARE_6 175 242 IPR000727 -
Cca06g00981 273 SMART SynN_4 13 127 IPR006011 GO:0016020
Cca06g00981 273 CDD SynN 28 148 IPR006011 GO:0016020
Cca06g00981 273 PANTHER SYNTAXIN 2 272 IPR045242 -
Cca06g00981 273 Pfam SNARE domain 216 268 IPR000727 -
Cca06g00981 273 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 180 242 IPR000727 -
Cca06g00981 273 ProSitePatterns Syntaxin / epimorphin family signature. 186 225 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cca06g00981 273 Gene3D - 161 273 - -
Cca06g00981 273 PANTHER SYNTAXIN OF PLANTS PROTEIN 2 272 - -
Cca06g00981 273 Gene3D - 20 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00981 Cca-Chr6 23563879 23568664 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00981 1 261 SNARE and Associated Proteins AT5G46860 76.628 2.65e-145 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00981 - K08488 gmx:100796477 417.927
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00981 06 23563879 23568664 Cca06g00981 06 23563879 23568664 ECH
Cca06g00981 06 23563879 23568664 Cca11g00822 11 15824641 15829199 PCT