Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00979 ATGACATTGGTTATCAGAGAGAGGAGGCACAAGCAAGCTCTAAGGCTTTCCTTGCCAAAGCCATCGCCAATTCCATCATCAAAAGATTTTCCACACCAAATCCACGTACCAACAGTGTTGCCATCACCTTCTTCCAATGTAGACTCTTCACCGGGCATCATCAAGGACCTTTTGGACCTTGAGAAGCTAGCAGTTCTTGGACATGGCAATGGTGGCACAGTCTACAAAGTTTATCACAAGAACAACCGTTGCTTTTATGCATTGAAAGTTCTACGCTTGAATGAGAATGGCATTGGAATTCGCCACCCCGCCACACTCGAGGCTGAGATTCTAAAACGAATGGATTCTCCATATATAGTAAGATGTCATGCAGTTTTTGACAATGGGAATTGCAGTGAAAGTGGCAAAGGTAGTGACATTAGCTTTGTCATGGAATACATGGAAGGAGGGTCGTTGCATGATGTCTTGCGACAACACCATAGGCTTCCAGAAGAGGTTATTGCGGGGTTGGCTAAGCGAGTTTTAGAAGGGCTTAACTATTTACATGGCAAGCACATTGTGCATAGAGATATTAAACCCTCAAACTTGCTAGTGAATAACAAGGGAGAGGTGAAGATTGCAGATTTTGGAGTGAGTCACGTGGTGGAAGGAAGGTTTGAGGGAAGTATCTCAAACGCCGGCACGTGTGCTTACATGAGTCCGGAAAGGGTTGATCCAGAAAGATGGGATGGTGAAAATGCGGATGAGTTTGCAGGAGATGTGTGGTCCATGGGGGTCGTGATGTTGGAATGTCTCTTTGGTCATTTTCCATTGATTGGTCCAGGGCAGAGACCAGATTGGGCAACTTTGATGTGTGCAATTTGCTTTGGGGAGAAGCTGGAGATGCCAGAGAAGGCATCGCCAGATTTCCAACATTTTGTGAGGAGGTGTCTTGAGAAGAATTGGAGGAAGAGAGCAACAGTGTTGGAACTTCTTCACCACCCTTTTGTGGGTAGGAATAGTTGCTGTTTCAGTAAAGGGCTTGGAGATTATGTTCTTCGGGGTTAA 1047 0.4546 MTLVIRERRHKQALRLSLPKPSPIPSSKDFPHQIHVPTVLPSPSSNVDSSPGIIKDLLDLEKLAVLGHGNGGTVYKVYHKNNRCFYALKVLRLNENGIGIRHPATLEAEILKRMDSPYIVRCHAVFDNGNCSESGKGSDISFVMEYMEGGSLHDVLRQHHRLPEEVIAGLAKRVLEGLNYLHGKHIVHRDIKPSNLLVNNKGEVKIADFGVSHVVEGRFEGSISNAGTCAYMSPERVDPERWDGENADEFAGDVWSMGVVMLECLFGHFPLIGPGQRPDWATLMCAICFGEKLEMPEKASPDFQHFVRRCLEKNWRKRATVLELLHHPFVGRNSCCFSKGLGDYVLRG 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00979 348 SMART serkin_6 60 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00979 348 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 5 333 IPR045269 GO:0004674|GO:0006914
Cca06g00979 348 CDD PKc_MAPKK_plant_like 59 330 - -
Cca06g00979 348 SUPERFAMILY Protein kinase-like (PK-like) 61 330 IPR011009 -
Cca06g00979 348 Pfam Protein kinase domain 61 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00979 348 ProSitePatterns Protein kinases ATP-binding region signature. 66 89 IPR017441 GO:0005524
Cca06g00979 348 ProSitePatterns Serine/Threonine protein kinases active-site signature. 186 198 IPR008271 GO:0004672|GO:0006468
Cca06g00979 348 ProSiteProfiles Protein kinase domain profile. 60 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00979 348 Gene3D Transferase(Phosphotransferase) domain 1 144 339 - -
Cca06g00979 348 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 10-LIKE 5 333 - -
Cca06g00979 348 Gene3D Phosphorylase Kinase; domain 1 47 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00979 Cca-Chr6 23548311 23549569 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00979 1 330 MAP Kinase Kinase Gene Family AT1G32320 52.121 1.35e-104 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Cca06g00979 Pkinase 8.3e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00979 K20604 - gmx:100817973 586.645