Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00978 ATGGAcggcggcgggtccaccccggcggcgccgattccgaacgcgaacgcgccaccgccgttcctgagcaagacgtacgacatggtggaggacccttccaccgacgcgatcgtgtcgtggagcgccaccaacaacagcttcgtcgtgtgggacccacccgaattcgccagagaccttttgcccaaatacttcaaacacaacaacttctccagcttcgttagacagttaaacacttacGGTTTTAGGAAGGTTGATCCAGATCGCTGGGAATTTGCAAATGAGGGTTTTTTGAGGGGTCAAAAGCACTTGCTTAGGAGTATAACTCGGCGAAAACCTGCCCATGGTCATAATCAACCGGCTCAGCAACCACATGGACAGAGTTCATCTGTAGGGGCATGTGTTGAAGTTGGGAAGTTTGGGCTTGAGGAAGAGGTTGAGAGGCTTAAAAGAGATAAGAATGTGCTCATGCAAGAGCTTGTGAGGTTAAGACAGCAGCAACAGACCACTGATAGCCAGCTGCAAGCAATGGTTCAGCGCCTTCAGGGAATGGAGCAACGACAGCAGCAAATGATGTCATTCCTTGCAAAAGCTGTCCAGAGCCCTGGCTTCTTTGCTCAGTTTGTACAACAACAGCAAAATGATAGCAATAGGCGCATAAGTGAAGTCAACAAAAAACGTCGGCTTAAACAGGAAGGTATTGCTGAAACAGAGAATGCTGCTGCTCCAGATGGACAAATTATTAAATATCAACCTCTGATGAATGAAGCAGCAACAGCAATGCTTAGGCAAATCATGAAATGGGATACTTCTCGTGTGGAATCTTTAAGTAAAAACACTGATAACTACATGATTGGTGATACTTCATCATCTTCCAGTGCAATGGACAGTAGCAGCTCTTCGGGCTGGACTTCTGGAGTAACTCTTCAAGAGGTCTCTCCAGCTACGGTGCAGTCTTCTCGTGCTCCAGCTGCAACTGGGACTCAAGGGCTTGTCCCCTCAACCGTTAAACCTGAAATTGTATCTGTACCACCACAAGCAGTAGCTTCTGAAAAAGTTACAAAGGATGGAACACCTGATGCACCTTCTATCCCTGTTTCTGAAGCAGATGTGATGATGCCTGATCTTCCTCCTATAACAGAGATGGTGACAGGAAATATTCTTGATATTCCCGAAGAAAATTATATGGCTCCTGAGACAGATGAGGGATATATGGATCCTTCTTCATTGGGGGTTATTGGATCATTTCCTGTTGATTTTGAAGGTATTTCACCTGATGCGGACATTGATGATTTGTTAGGCAATCCTTCTATTTGGGATGATCTTTTGCAAACTCCAGTTCCGGAGGATATTGATACCAACGTGGCTGAAGTATCCAAAGGGAATGAGGTCCAGCCAACCGAAAATGGATGGAACAAAACTCAGCATATGGATCACCTTACAGAGCAGATGGGTCTTCTTTCTTCTGATGCGAAAAGAGTTTGA 1482 0.3731 MDGGGSTPAAPIPNANAPPPFLSKTYDMVEDPSTDAIVSWSATNNSFVVWDPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRSITRRKPAHGHNQPAQQPHGQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDSQLQAMVQRLQGMEQRQQQMMSFLAKAVQSPGFFAQFVQQQQNDSNRRISEVNKKRRLKQEGIAETENAAAPDGQIIKYQPLMNEAATAMLRQIMKWDTSRVESLSKNTDNYMIGDTSSSSSAMDSSSSSGWTSGVTLQEVSPATVQSSRAPAATGTQGLVPSTVKPEIVSVPPQAVASEKVTKDGTPDAPSIPVSEADVMMPDLPPITEMVTGNILDIPEENYMAPETDEGYMDPSSLGVIGSFPVDFEGISPDADIDDLLGNPSIWDDLLQTPVPEDIDTNVAEVSKGNEVQPTENGWNKTQHMDHLTEQMGLLSSDAKRV 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00978 493 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-1 11 479 - -
Cca06g00978 493 Pfam HSF-type DNA-binding 21 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca06g00978 493 Gene3D - 14 111 IPR036388 -
Cca06g00978 493 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 11 479 IPR027725 -
Cca06g00978 493 MobiDBLite consensus disorder prediction 346 370 - -
Cca06g00978 493 MobiDBLite consensus disorder prediction 282 305 - -
Cca06g00978 493 SMART hsfneu3 17 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca06g00978 493 ProSitePatterns HSF-type DNA-binding domain signature. 60 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca06g00978 493 MobiDBLite consensus disorder prediction 313 332 - -
Cca06g00978 493 Coils Coil 138 165 - -
Cca06g00978 493 PRINTS Heat shock factor (HSF) domain signature 21 44 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca06g00978 493 PRINTS Heat shock factor (HSF) domain signature 59 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca06g00978 493 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca06g00978 493 SUPERFAMILY "Winged helix" DNA-binding domain 16 110 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00978 Cca-Chr6 23539509 23544388 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00978 2 487 HSF AT1G32330 54.274 4.11e-169 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Cca06g00978 HSF_DNA-bind 2.4e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00978 K09419 - gmx:100815121 832.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00978 06 23539509 23544388 Cca06g00978 06 23539509 23544388 ECH