Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00974 ATGAGAGGGAACCACCACCAGCGTGCGGCCCAAGCCTCGTCCCTCACTCCAAACCCTTCCTCTTCTTCCACTCACCGCAATTTGGGCCCGCCAAACCCCCGCAGGCCCGCCCGGAGGACTCCAGGCCCACAACACCACCACCACCGCCAGCCCAACTTCCAATTCCGCGTCGTCAACAATCCCCAACCGCTTCCTTCCTCCGTCCAGGATGTAAACGCTGATGTCACCGATCGCGTAGCTAGCTCAGGCAAGGCCgaggaaggagacgctgatgatgactctgatgctgatgctgatggtgatgTTCAGGCTAGGCTTGGTAAGTTGTTCAGTAGAATCGAGGAACCTGAATTGTCCGAGGAGCAGATCAGAATCAATGATCAATTGCAGCAAGATGAGATGCTTGTGGTGGAGTCAATTTATGGAGAAAACGTTTTCAGCCTTGAGAGATGGAAAGATTTGCGCTGTTTTCAGATACATATACACATTGATGTTTTGGGTGAAATTCCAATCCTTGCTAAGCTGAACTCTCTTAATCAACTTGAGACTGTAAACAGCAATTCAGACGAGTTCTTATACACTTTCAAAGTTCAATATCTTCCACCGATTGTTTTGACGTGTTTATTACCTAAGTCGTACCCAAGCCACCAAAAACCTATTTTTACACTCTCTGTTAAGTGGTTGGAACCCCTGAAGATTACAAGTCTGTGCTCTAAGTTGGATTCAATATGGGCCGAACAACAGGGGCAGGAAGTAATTTACTCTTGGGTAGAATGGTTACATGGTTGTTCTCTTTCTCATCTGGGATTTGATGAGGGAATCACACTCGGGCCTTATGGCATGAATCATGTCCGGGATGAGCGTGTTGTTTCAGGAGCTGAATGCATTGATGTTGATATTCCTTTTTTACAAAGTTACAATGATCAGAGACACCATGAGAACTTCCTTAAAGAATTGCATCAATGTAACATTTGCTTTAGTGAATTTGCTGGTAATGAGTTTATCCGGTTACCATGTAAGCACTTTTTTTGCCTCAAGTGCTTGCAGACCTTTGCCCAGATACATGTAAAGGAAGGCACCGTTAGTAATCTTCAGTGTCCTGAAGCAAAATGTGCTGTTATGATTCCACCTGGCCTTTTAAAACACTTGCTGGATGACACAGATTATGAGCGCTGGGAATCCATGATGTTGGAAAAAACACTTGCGTCAATGTCTGATGTTGTTTATTGTCCAAGATGTGAAACACCATGTATAGAGGATGAAGACCAGCATGCTCAATGTCCAAAATGCTATTTTAGCTTTTGTACCCTTTGCAGGGAACGACGCCATGTTGGCATAGCATGCATGACACTAGATATGAAGCTTCAGATTTTGCAGGATCGTCAAAATTCGACTCAGTTAAAGGCAGATCAAAAGCGTAAGGAACTTGAGAAGATTAATGAAATGCTCAGTATGAAGGAAATTCATCGTGATTCCAAGTTGTGCCCTTCTTGTGACATGGCAATTTCTCGAACTGAAGGTTGTAACAAAATGAAATGCGGTAATTGTGAACAATACTTCTGTTACCGCTGCAACAAAGCACTTGATGCATCAGACCCATATGGACATTTTAGGGATGGTTCATGTGAATTGTTCCCACGAGAAATGGTTGATTCCTGGCAAGAGCGTATAAATCATCGCCAGGCGGTGGGACAATTACAGGCTGAGCTCTTTCCTCAATGTGGCTTGGCATGTCCTAACTGTCGTCAATTTAATGCAAAGGTGAGTAAAGCTTTCTGTTTGTTTATTATAAAATGA 1797 0.4263 MRGNHHQRAAQASSLTPNPSSSSTHRNLGPPNPRRPARRTPGPQHHHHRQPNFQFRVVNNPQPLPSSVQDVNADVTDRVASSGKAEEGDADDDSDADADGDVQARLGKLFSRIEEPELSEEQIRINDQLQQDEMLVVESIYGENVFSLERWKDLRCFQIHIHIDVLGEIPILAKLNSLNQLETVNSNSDEFLYTFKVQYLPPIVLTCLLPKSYPSHQKPIFTLSVKWLEPLKITSLCSKLDSIWAEQQGQEVIYSWVEWLHGCSLSHLGFDEGITLGPYGMNHVRDERVVSGAECIDVDIPFLQSYNDQRHHENFLKELHQCNICFSEFAGNEFIRLPCKHFFCLKCLQTFAQIHVKEGTVSNLQCPEAKCAVMIPPGLLKHLLDDTDYERWESMMLEKTLASMSDVVYCPRCETPCIEDEDQHAQCPKCYFSFCTLCRERRHVGIACMTLDMKLQILQDRQNSTQLKADQKRKELEKINEMLSMKEIHRDSKLCPSCDMAISRTEGCNKMKCGNCEQYFCYRCNKALDASDPYGHFRDGSCELFPREMVDSWQERINHRQAVGQLQAELFPQCGLACPNCRQFNAKVSKAFCLFIIK 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00974 598 ProSiteProfiles TRIAD supradomain profile. 318 548 IPR044066 -
Cca06g00974 598 MobiDBLite consensus disorder prediction 1 99 - -
Cca06g00974 598 SMART ring_2 322 369 IPR001841 -
Cca06g00974 598 Gene3D Ubiquitin Conjugating Enzyme 119 268 IPR016135 -
Cca06g00974 598 Pfam RWD domain 128 261 IPR006575 GO:0005515
Cca06g00974 598 Gene3D - 465 571 - -
Cca06g00974 598 SMART RWD2001b 132 267 IPR006575 GO:0005515
Cca06g00974 598 SUPERFAMILY UBC-like 126 261 IPR016135 -
Cca06g00974 598 Pfam IBR domain, a half RING-finger domain 484 528 IPR002867 -
Cca06g00974 598 Pfam IBR domain, a half RING-finger domain 390 448 IPR002867 -
Cca06g00974 598 ProSiteProfiles Zinc finger RING-type profile. 322 370 IPR001841 -
Cca06g00974 598 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 317 405 IPR013083 -
Cca06g00974 598 SUPERFAMILY RING/U-box 482 537 - -
Cca06g00974 598 SMART ibrneu5 390 448 IPR002867 -
Cca06g00974 598 SMART ibrneu5 477 542 IPR002867 -
Cca06g00974 598 MobiDBLite consensus disorder prediction 53 76 - -
Cca06g00974 598 SUPERFAMILY RING/U-box 317 401 - -
Cca06g00974 598 SUPERFAMILY RING/U-box 390 453 - -
Cca06g00974 598 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 96 575 IPR031127 GO:0004842|GO:0016567
Cca06g00974 598 Pfam Zinc finger, C3HC4 type (RING finger) 322 367 IPR018957 GO:0046872
Cca06g00974 598 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 96 575 - -
Cca06g00974 598 ProSitePatterns Zinc finger RING-type signature. 339 348 IPR017907 -
Cca06g00974 598 ProSiteProfiles RWD domain profile. 132 267 IPR006575 GO:0005515
Cca06g00974 598 MobiDBLite consensus disorder prediction 7 29 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00974 321 597 ARIADNE family AT2G31780 21.835 7.03e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00974 K11971 - gmx:100500662 932.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00974 06 23521319 23526035 Cca06g00974 06 23521319 23526035 ECH