Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00973 ATGTCAGACCGGGGTACCTTCTCCGGTGACTCGGCCATTGAATCCAAGAGCAAAAAGGAACACAAAGTTTCTTTGCTCAAACTCTTCTCTTTTGCTGACTTCTATGACTATGTCTTAATGGCCGTTGGATCTGTTGGGGCATGTGTACATGGCGCTTCTGTTCCCGTTTTCTTTATCTTCTTTGGAAAGTTGATCAATGTCATAGGCTTGGCCTATCTTTTCCCCAAGGAAGCCTCTCACAAAGTTGCAAAGTACTCGTTGGATTTTGTGTATCTAAGTATAGCAATATTGTTTTCATCTTGGACAGAGGTGGCTTGCTGGATGCACACCGGGGAACGTCAAGCTGCAAAGATGAGAATGGCTTATTTGAAGTCAATGTTGAATCAAGATATAAGCCTTTTTGATACAGAGGCTTCAACAGGAGAAGTCATCTCTGCCATTACCAGTGACATTATTATTGTTCAAGATGCACTATCTGAGAAGGTAGGGAACTTCATGCACTACATAAGCCGATTTATAGCGGGCTTTGTTATTGGATTTGTTAGAGTGTGGCAGATCAGTCTAGTGACACTTTCAATTGTCCCCTTGATTGCCCTTGCTGGAGGTCTTTATGCATATGTCACAATTGGGCTTATTGCAAAAGTGAGAAAAGCCTATGTGAGGGCTGGTGAAATTGCTGAAGAGGTGATAGGAAATGTTAGAACTGTTCAAGCATTTGCCGGAGAAGAAAGAGCAGTAAGATCATATAAAGCTGCACTCATGAAAACTTACGTAAACGGTAGAAAAGCAGGTTTGGCAAAGGGCCTGGGCCTGGGCTCAATGCATTGTGTCCTTTTTCTATCGTGGGCTTTGCTTGTTTGGTTCACCAGTATTGTTGTTCATAAGAATATTGCCAATGGAGGCGAGTCTTTCACTACCATGCTCAATGTTGTCATCGCTGGCCTGTCACTTGGGCAAGCAGCACCAGATATATCTGCATTCATCCGAGCAAAGGCAGCAGCTTATCCAATTTTTGAGATGATAGAGAGGGACACGGTGAGCAAAAGTAGCTCAAAAACTGGTCGCAAGTTAGGCAAATTGGAGGGTCATATTCAGTTTAAGAATGTGTGTTTCAGTTACCCATCTCGTCCAGATGTAGCAATATTCAACAACCTGTGTCTTGACATTCCATCAGGGAAAATTGTAGCCCTTGTGGGAGGAAGTGGTTCTGGAAAGAGCACTGTCATATCATTGATTGAACGCTTCTATGAACCACTTTCTGGTCAGATACTATTAGACAGGAATGAGATCAGGGAACTTGATCTCAAATGGCTTAGGCAGCAAATTGGGCTGGTTAATCAAGAACCAGCCCTTTTTGCTACGAGCATCAAGGAGAACATACTTTATGGAAAAGATGATGCCACTCTTGAAGAACTAAAACGTGCTGTGAAGCTTTCAGATGCTCAGAGTTTCGTTAACAATCTTCCTGAAAGACTAGAAACTCAGGTTGGTGAGAGGGGGATACAACTATCAGGAGGGCAAAAGCAAAGGATTGCAATATCTCGTGCAATCGTGAAGAATCCATCAATCCTTTTGTTGGATGAAGCAACCAGTGCTCTGGATGCAGAGTCTGAGAAGAGTGTACAGGAGGCTCTGGATCGTGTGATGGTAGGGAGAACAACTGTTGTAGTGGCACACAGACTCTCCACCATTAGAAATGCAGACGTTATAGCTGTTGTCCAGGGAGGGAAGATTGTGGAAACTGGTAACCATGAAGAGCTCATGTCCAACCCAACTAGTGTATATGCATCTCTTGTTCAACTCCAGGAGGCAGCTTCTGTGCAGCGCCTCCCATCAATTGGTCCTAGCTTGGGACGCCAACCAAGTATAACCTACTCAAGAGAATTATCCCGTACAACAACAAGCCTTGGTGGTAGTTTTCGATCAGATAAAGAGGCTGGCCGGGTTTGTGCTGATGAACCAGAAAATGCAAGCAAGAAAAGGCATGTTTCAGCAGCAAGACTGTATTCTATGGTTGGTCCAGACTGGTTTTATGGGGTTTTTGGGACCTTATGTGCATTTGTTGCTGGAGCACAGATGCCACTTTTTGCCCTTGGAATTTCTCATGCACTTGTATCATACTATATGGACTGGGACACAACATGTCGCGAAGTGAAAAAAATTGCTTTCCTCTTCTGTGGAGCAGCAGTTATAACTATCACTGTCCATGCCATTGAACATCTTTCTTTTGGAATCATGGGAGAGCGGCTTACTCTTCGCGTGAGAGAAATGATGTTTTCTGCTATTTTGAAGAACGAAATTGGCTGGTTTGATGATACAAACAACACAAGTTCTATGCTTTCATCGCAATTAGAGACTGATGCAACGTTATTACGGACTATAGTTGTTGATCGATCAACAATTCTGTTACAGAACATTGGTTTGGTTGTTGCTTCATTTATTATTGCCTTCATCTTGAACTGGAGAATAACACTTGTTGTCATAGCCACATATCCTTTGATCATTAGTGGTCATATAAGTGAGAAACTTTTTATGAAAGGCTATGGTGGCAACTTGAGCAAGGCATATCTAAAAGCCAACATGCTGGCTGGGGAGGCTGTGAGCAATATACGCACTGTTGCTGCATTTTGTTCTGAAGAAAAGGTCCTTGACCTTTATGCTAATGAGCTTGTTGATCCCTCAAAACGCTCGTTTCAACGAGGCCAAATTGCTGGCATATTCTATGGCATTTCCCAGTTCTTTATTTTCTCGTCATATGGCCTTGCCTTGTGGTATGGATCTGTTTTGATGGAGAAGGAGCTTGCTAGCTTTAAATCAATTATGAAGTCATTTATGGTTTTGATAGTGACAGCACTGGCTATGGGGGAGACTTTGGCCCTGGCGCCAGACCTTCTGAAAGGGAATCAAATGGTTGCGTCAGTTTTTGAAGTGATGGATAGAAAATCAGGAATAACAGGTGATGTTGGAGAAGAGTTGAAGACAGTGGAGGGAACCATTGAGCTCAAAAGAATCAATTTCAGCTACCCTTCAAGGCCAGATGTAATTATTTTCAAGGATTTCAATCTAAGAGTTCCTGCAGGCAAGAGTGTTGCCTTAGTGGGGCAAAGTGGTTCTGGTAAAAGCTCTGTGATCTCCCTTATACTCAGATTCTATGATCCAACATCCGGAAGGGTGCTAATTGATGGAAAAGACATCACAAGACTTAATCTGAAATCTCTCAGGAAACACATTGGTCTTGTGCAACAAGAACCAGCTCTTTTTGCAACATCAATTTATGAAAACATACTTTATGGAAAGGAGGGTGCATCTGATTCAGAAGTGATTGAAGCAGCTAAGCTAGCCAATGCTCATAGCTTCATCAGTGGTCTTCCTGAGGGATACTCCACCAAAGTAGGTGAACGAGGAGTGCAACTTTCTGGTGGCCAAAGACAAAGGGTAGCCATAGCAAGAGCAGTTCTAAAGAACCCTGAAATCTTGCTACTGGATGAAGCCACTAGTGCACTTGATGTGGAGTCAGAGCGTGTGGTGCAGCAGGCATTGGACAGATTAATGCAGAATAGAACAACAATTATGGTGGCACATAGGCTATCCACTATAAGAAATGCAGACCAAATCTCAGTTTTACAGGATGGAAAGATAATTGAGCAAGGGACTCATTCAAGTCTTATAGAGAATAAAAATGGAGCATACTATAAATTAGTCAACCTTCAACAACAACACCATCAATTATAG 3732 0.4271 MSDRGTFSGDSAIESKSKKEHKVSLLKLFSFADFYDYVLMAVGSVGACVHGASVPVFFIFFGKLINVIGLAYLFPKEASHKVAKYSLDFVYLSIAILFSSWTEVACWMHTGERQAAKMRMAYLKSMLNQDISLFDTEASTGEVISAITSDIIIVQDALSEKVGNFMHYISRFIAGFVIGFVRVWQISLVTLSIVPLIALAGGLYAYVTIGLIAKVRKAYVRAGEIAEEVIGNVRTVQAFAGEERAVRSYKAALMKTYVNGRKAGLAKGLGLGSMHCVLFLSWALLVWFTSIVVHKNIANGGESFTTMLNVVIAGLSLGQAAPDISAFIRAKAAAYPIFEMIERDTVSKSSSKTGRKLGKLEGHIQFKNVCFSYPSRPDVAIFNNLCLDIPSGKIVALVGGSGSGKSTVISLIERFYEPLSGQILLDRNEIRELDLKWLRQQIGLVNQEPALFATSIKENILYGKDDATLEELKRAVKLSDAQSFVNNLPERLETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQGGKIVETGNHEELMSNPTSVYASLVQLQEAASVQRLPSIGPSLGRQPSITYSRELSRTTTSLGGSFRSDKEAGRVCADEPENASKKRHVSAARLYSMVGPDWFYGVFGTLCAFVAGAQMPLFALGISHALVSYYMDWDTTCREVKKIAFLFCGAAVITITVHAIEHLSFGIMGERLTLRVREMMFSAILKNEIGWFDDTNNTSSMLSSQLETDATLLRTIVVDRSTILLQNIGLVVASFIIAFILNWRITLVVIATYPLIISGHISEKLFMKGYGGNLSKAYLKANMLAGEAVSNIRTVAAFCSEEKVLDLYANELVDPSKRSFQRGQIAGIFYGISQFFIFSSYGLALWYGSVLMEKELASFKSIMKSFMVLIVTALAMGETLALAPDLLKGNQMVASVFEVMDRKSGITGDVGEELKTVEGTIELKRINFSYPSRPDVIIFKDFNLRVPAGKSVALVGQSGSGKSSVISLILRFYDPTSGRVLIDGKDITRLNLKSLRKHIGLVQQEPALFATSIYENILYGKEGASDSEVIEAAKLANAHSFISGLPEGYSTKVGERGVQLSGGQRQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMQNRTTIMVAHRLSTIRNADQISVLQDGKIIEQGTHSSLIENKNGAYYKLVNLQQQHHQL 1243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00973 1243 SUPERFAMILY ABC transporter transmembrane region 667 980 IPR036640 GO:0005524|GO:0016021
Cca06g00973 1243 ProSitePatterns ABC transporters family signature. 1138 1152 IPR017871 GO:0005524
Cca06g00973 1243 Gene3D ABC transporter type 1, transmembrane domain 27 608 IPR036640 GO:0005524|GO:0016021
Cca06g00973 1243 CDD ABC_6TM_Pgp_ABCB1_D2_like 669 984 - -
Cca06g00973 1243 CDD ABC_MTABC3_MDL1_MDL2 999 1237 - -
Cca06g00973 1243 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 999 1235 IPR003439 GO:0005524
Cca06g00973 1243 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 41 329 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca06g00973 1243 ProSitePatterns ABC transporters family signature. 503 517 IPR017871 GO:0005524
Cca06g00973 1243 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 357 602 IPR027417 -
Cca06g00973 1243 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 364 600 IPR003439 GO:0005524
Cca06g00973 1243 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 993 1237 IPR027417 -
Cca06g00973 1243 Gene3D - 354 603 IPR027417 -
Cca06g00973 1243 Coils Coil 1233 1243 - -
Cca06g00973 1243 Gene3D ABC transporter type 1, transmembrane domain 800 996 IPR036640 GO:0005524|GO:0016021
Cca06g00973 1243 CDD ABC_6TM_Pgp_ABCB1_D1_like 40 337 - -
Cca06g00973 1243 Pfam ABC transporter transmembrane region 681 952 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca06g00973 1243 Pfam ABC transporter transmembrane region 45 312 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca06g00973 1243 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 16 1239 IPR039421 -
Cca06g00973 1243 SMART AAA_5 1026 1212 IPR003593 -
Cca06g00973 1243 SMART AAA_5 391 577 IPR003593 -
Cca06g00973 1243 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 16 1239 - -
Cca06g00973 1243 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 680 966 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca06g00973 1243 Pfam ABC transporter 1018 1166 IPR003439 GO:0005524
Cca06g00973 1243 Pfam ABC transporter 383 531 IPR003439 GO:0005524
Cca06g00973 1243 SUPERFAMILY ABC transporter transmembrane region 27 334 IPR036640 GO:0005524|GO:0016021
Cca06g00973 1243 CDD ABC_MTABC3_MDL1_MDL2 364 602 - -
Cca06g00973 1243 Gene3D - 997 1240 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00973 Cca-Chr6 23482715 23492212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00973 35 608 Calmodulin-binding Proteins AT2G36910 38.660 1.00e-111 379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00973 06 23482715 23492212 Cca06g00973 06 23482715 23492212 ECH