Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00972 ATGGGTAGGTCACCATGTTGTGAAGAGAGTAGTAGTGTAAAGAAAGGACCATGGACACCGGAAGAAGATGAGAAGCTGATTGAATATATCAGCAAACAAGGCCATGGCAGTTGGAGAACCCTTCCAAAGCGTGCAGGTCTCAATAGGTGTGGCAAGAGTTGCAGATTAAGGTGGACAAACTATCTGAGGCCAGATATCAAGAGAGGCAAATTCACTGAGGAAGAAGAGAGACTTATCATCAACCTTCATTCAGTTCTTGGAAACAAGTGGTCAAAGATTGCAGCACATCTGCCAGGAAGAACTGATAATGAGATCAAGAATTATTGGAACACTAGCATAAGGAAAAAGCTTCTCAAGATGGGTATTGATCCAGAAACTCACAAGCCAAGGACAGACTTCAATCACCTAATGAATCTTTCGCAGTTGCTTGGCATGTCAAACTTGAGCAGTGCTATGAATACTACTTGGGGCAATAATAACCCTTTTGGTATGCCAGCAGATATCACTCAACTAGCCAAAATACAACTACTGCAAAGCCTGTTGCAAATTATGAACAGCAATTCATTTGTTAACATGGGAAACCCTAACCTCTTAGTAGGAAATCCCAACCTCAACCCTTTATTTCTCAACGGATTAAACCCCCTCCAACCTAAGGAGCCTGTGGTGTTGAGTGGTAGTGAAGAATATGCTAACCATGTAAATGGTATGTACTCTCAAGCACAAAGTGAGTGCTCTCAGCATGAAGTTTCAAAATCATGTGCAGATGTAGAGGGTGGATCTAATCCACAAGATCCTGATTACAACAAAATTAACAGCACTTCTTCACTTGAAAATCAAGCAGAAGAACCTCTTCCTGCATTAGTTGTATCTTCTCCAAGGATGGGAACCTTCAACCAAATGAACAATGGATGCAACATGGCTCAAACGTTCACAAAGTCACCTTCCAACACAATCTTTGATGATTGGGAGAAGTTCCTTGAAGATGAAACAACCGGTTCCTACTGGAAAGAGATTCTAGAATCCACTTCTGCGTCACCAATTTTGTGGTAG 1050 0.4171 MGRSPCCEESSSVKKGPWTPEEDEKLIEYISKQGHGSWRTLPKRAGLNRCGKSCRLRWTNYLRPDIKRGKFTEEEERLIINLHSVLGNKWSKIAAHLPGRTDNEIKNYWNTSIRKKLLKMGIDPETHKPRTDFNHLMNLSQLLGMSNLSSAMNTTWGNNNPFGMPADITQLAKIQLLQSLLQIMNSNSFVNMGNPNLLVGNPNLNPLFLNGLNPLQPKEPVVLSGSEEYANHVNGMYSQAQSECSQHEVSKSCADVEGGSNPQDPDYNKINSTSSLENQAEEPLPALVVSSPRMGTFNQMNNGCNMAQTFTKSPSNTIFDDWEKFLEDETTGSYWKEILESTSASPILW 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00972 349 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Cca06g00972 349 SMART sant 67 115 IPR001005 -
Cca06g00972 349 SMART sant 14 64 IPR001005 -
Cca06g00972 349 Gene3D - 70 117 - -
Cca06g00972 349 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 342 - -
Cca06g00972 349 PANTHER MYB TRANSCRIPTION FACTOR 1 342 - -
Cca06g00972 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Cca06g00972 349 Gene3D - 14 67 - -
Cca06g00972 349 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Cca06g00972 349 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Cca06g00972 349 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Cca06g00972 349 Pfam Myb-like DNA-binding domain 68 111 IPR001005 -
Cca06g00972 349 MobiDBLite consensus disorder prediction 264 280 - -
Cca06g00972 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Cca06g00972 349 MobiDBLite consensus disorder prediction 248 281 - -
Cca06g00972 349 CDD SANT 70 111 IPR001005 -
Cca06g00972 349 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00972 Cca-Chr6 23466457 23468191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00972 1 340 MYB Transcription Factor Family AT5G16770 45.915 3.13e-88 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca06g00972 Myb_DNA-binding 4.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00972 K09422 - gmx:100810159 536.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00972 06 23466457 23468191 Cca06g00972 06 23466457 23468191 ECH
Cca06g00972 06 23466457 23468191 Cca11g00817 11 15634976 15636412 PCT