Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca06g00969 | ATGGGCAAGAAGAAATCTAAGGACTCGCCCCAAACCGACACCGTTTCATCCCCTTCCAGCATTTTCACCAAGCTCTTCAGCACCGCGCCGGAACAAAGCACCGCCGCCTCTCTATTTTCCGACGACAACCCTTTTCGGAGAAAACCCGCTCCACTTTCCGACTCAACCAACCACACTGAGAGCCCCAACAACGTTGCCCCCGTGAACCCCGATGCCGATGAAGAGAAGAAGCGGAAGAGGCACAAGGAGAAAGCCCCAACCCCACCCCTCGATTCCGATCCCGTAATCGAAGTTTCGAAGAAATCGGAGAAGAAGAGAAAACGCCTTTCCGATGAAGGAAGGGAAAGAGACCCTAATTTGGCCGCAGAAGCTATTGGGAAGaggaaaaggaaaagggacgaagttgagaaggagtgggaggagaagaagtatggggcagtggagaatggCGCAAATGAAGGGATTGAGAATAAAACGGTTGGGAGCAAGAGGAAGACGTTGGATGATCCAGCTGATATGATGGTTTCAAAGGAGGGTTTTGATGATGAGGATAAGCTTTTGAGGACTATTTTTGTTGGGAATTTGCCTCTCAAGGTGAAAAAGAAGACTCTGTTGAAAGAGTTTAAGAAGTTTGGCGAGGTTGAGTCCGTGAGGATTCGTTCTGTCCCAATTCAGGATACCAAGAAACCAAGAAAAGGAGCTATCCTTGCGAAGAAAATAAATGATGCTGCTGATAGTGTTCATGCATACGTTGTTTTCAAAACTGAGCAATCGGCCCAGGCTTCTTTGTCGCACAACATGACACTGGTTGAAGGAAATCACATTCGTGTTGATAGGGCATGCCCACCCCGCAAGAAACATAAAGGGGAGAGTGTTCCACTTTATGATAATGAGAGAACTGTTTTTGTTGGCAACCTACCATTTGATGTGAAGGATGAAGAGGTGTATCAGTTGTTTTGTGGTATATCCAACACAGAATCAAATATAGAAGCTGTCAGAGTCATTCGAGATCCTCATCTTAGTGTTGGAAAGGGTATTGCCTATGTTCTGTTTAAAACAAAGGAAGCTGCTAAATTTGTTGTTAAGAAACGGAACTTGAAGCTTCGAGACCGAGAGTTGAGACTCTCTCGTGCCAAAGCAGATGCTACCCCATCGAAAAGGCCAAACCCATCATCATCACAAGCTCCTAGTACCCCTGCAAAGAGGTTGGCTGTGGCTTCAAGGTCTCCTTCAAGCAGTAATAACAGATCAAACAGAAAACCCAATACATCTTACCAGGGTCTACGAGCAACGAAATCTGATGTGCACAAGAAAGTCCCTGGAGGAGAAAAACCAAAGGAACGCAAGACAAAAAGACCTACAGTAGCTGCCAGAAAGGCCAAAACAAAATTGCTCAAGGAGAATGGTCCACCAAAACAAGCAGGGGTAAAACGCAAGCTTGATAGTCGTACTCCAGACAGTTCCCTACGTAGCAAAAAAACCAAAAAGAACAGGTAG | 1497 | 0.4375 | MGKKKSKDSPQTDTVSSPSSIFTKLFSTAPEQSTAASLFSDDNPFRRKPAPLSDSTNHTESPNNVAPVNPDADEEKKRKRHKEKAPTPPLDSDPVIEVSKKSEKKRKRLSDEGRERDPNLAAEAIGKRKRKRDEVEKEWEEKKYGAVENGANEGIENKTVGSKRKTLDDPADMMVSKEGFDDEDKLLRTIFVGNLPLKVKKKTLLKEFKKFGEVESVRIRSVPIQDTKKPRKGAILAKKINDAADSVHAYVVFKTEQSAQASLSHNMTLVEGNHIRVDRACPPRKKHKGESVPLYDNERTVFVGNLPFDVKDEEVYQLFCGISNTESNIEAVRVIRDPHLSVGKGIAYVLFKTKEAAKFVVKKRNLKLRDRELRLSRAKADATPSKRPNPSSSQAPSTPAKRLAVASRSPSSSNNRSNRKPNTSYQGLRATKSDVHKKVPGGEKPKERKTKRPTVAARKAKTKLLKENGPPKQAGVKRKLDSRTPDSSLRSKKTKKNR | 498 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca06g00969 | 498 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 188 | 282 | IPR000504 | GO:0003723 | |
Cca06g00969 | 498 | CDD | RRM1_RBM34 | 188 | 278 | IPR034220 | - | |
Cca06g00969 | 498 | MobiDBLite | consensus disorder prediction | 385 | 430 | - | - | |
Cca06g00969 | 498 | Gene3D | - | 294 | 387 | IPR012677 | - | |
Cca06g00969 | 498 | MobiDBLite | consensus disorder prediction | 431 | 450 | - | - | |
Cca06g00969 | 498 | PANTHER | RNA-BINDING PROTEIN 34 | 40 | 496 | - | - | |
Cca06g00969 | 498 | MobiDBLite | consensus disorder prediction | 460 | 492 | - | - | |
Cca06g00969 | 498 | MobiDBLite | consensus disorder prediction | 70 | 88 | - | - | |
Cca06g00969 | 498 | CDD | RRM2_RBM34 | 300 | 376 | IPR034221 | - | |
Cca06g00969 | 498 | Gene3D | - | 184 | 288 | IPR012677 | - | |
Cca06g00969 | 498 | SUPERFAMILY | RNA-binding domain, RBD | 296 | 394 | IPR035979 | GO:0003676 | |
Cca06g00969 | 498 | MobiDBLite | consensus disorder prediction | 372 | 498 | - | - | |
Cca06g00969 | 498 | SUPERFAMILY | RNA-binding domain, RBD | 181 | 288 | IPR035979 | GO:0003676 | |
Cca06g00969 | 498 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 301 | 373 | IPR000504 | GO:0003723 | |
Cca06g00969 | 498 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 190 | 232 | IPR000504 | GO:0003723 | |
Cca06g00969 | 498 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H | 40 | 496 | - | - | |
Cca06g00969 | 498 | SMART | rrm1_1 | 189 | 278 | IPR000504 | GO:0003723 | |
Cca06g00969 | 498 | SMART | rrm1_1 | 300 | 376 | IPR000504 | GO:0003723 | |
Cca06g00969 | 498 | MobiDBLite | consensus disorder prediction | 50 | 66 | - | - | |
Cca06g00969 | 498 | MobiDBLite | consensus disorder prediction | 11 | 40 | - | - | |
Cca06g00969 | 498 | MobiDBLite | consensus disorder prediction | 96 | 140 | - | - | |
Cca06g00969 | 498 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 299 | 380 | IPR000504 | GO:0003723 | |
Cca06g00969 | 498 | MobiDBLite | consensus disorder prediction | 1 | 140 | - | - |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca06g00969 | 190 | 379 | Eukaryotic Initiation Factors Gene Family | AT1G22760 | 25.773 | 1.28e-06 | 49.3 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca06g00969 | K14837 | - | gmx:100809622 | 731.865 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca06g00969 | 06 | 23421517 | 23427405 | Cca06g00969 | 06 | 23421517 | 23427405 | ECH |