Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00969 ATGGGCAAGAAGAAATCTAAGGACTCGCCCCAAACCGACACCGTTTCATCCCCTTCCAGCATTTTCACCAAGCTCTTCAGCACCGCGCCGGAACAAAGCACCGCCGCCTCTCTATTTTCCGACGACAACCCTTTTCGGAGAAAACCCGCTCCACTTTCCGACTCAACCAACCACACTGAGAGCCCCAACAACGTTGCCCCCGTGAACCCCGATGCCGATGAAGAGAAGAAGCGGAAGAGGCACAAGGAGAAAGCCCCAACCCCACCCCTCGATTCCGATCCCGTAATCGAAGTTTCGAAGAAATCGGAGAAGAAGAGAAAACGCCTTTCCGATGAAGGAAGGGAAAGAGACCCTAATTTGGCCGCAGAAGCTATTGGGAAGaggaaaaggaaaagggacgaagttgagaaggagtgggaggagaagaagtatggggcagtggagaatggCGCAAATGAAGGGATTGAGAATAAAACGGTTGGGAGCAAGAGGAAGACGTTGGATGATCCAGCTGATATGATGGTTTCAAAGGAGGGTTTTGATGATGAGGATAAGCTTTTGAGGACTATTTTTGTTGGGAATTTGCCTCTCAAGGTGAAAAAGAAGACTCTGTTGAAAGAGTTTAAGAAGTTTGGCGAGGTTGAGTCCGTGAGGATTCGTTCTGTCCCAATTCAGGATACCAAGAAACCAAGAAAAGGAGCTATCCTTGCGAAGAAAATAAATGATGCTGCTGATAGTGTTCATGCATACGTTGTTTTCAAAACTGAGCAATCGGCCCAGGCTTCTTTGTCGCACAACATGACACTGGTTGAAGGAAATCACATTCGTGTTGATAGGGCATGCCCACCCCGCAAGAAACATAAAGGGGAGAGTGTTCCACTTTATGATAATGAGAGAACTGTTTTTGTTGGCAACCTACCATTTGATGTGAAGGATGAAGAGGTGTATCAGTTGTTTTGTGGTATATCCAACACAGAATCAAATATAGAAGCTGTCAGAGTCATTCGAGATCCTCATCTTAGTGTTGGAAAGGGTATTGCCTATGTTCTGTTTAAAACAAAGGAAGCTGCTAAATTTGTTGTTAAGAAACGGAACTTGAAGCTTCGAGACCGAGAGTTGAGACTCTCTCGTGCCAAAGCAGATGCTACCCCATCGAAAAGGCCAAACCCATCATCATCACAAGCTCCTAGTACCCCTGCAAAGAGGTTGGCTGTGGCTTCAAGGTCTCCTTCAAGCAGTAATAACAGATCAAACAGAAAACCCAATACATCTTACCAGGGTCTACGAGCAACGAAATCTGATGTGCACAAGAAAGTCCCTGGAGGAGAAAAACCAAAGGAACGCAAGACAAAAAGACCTACAGTAGCTGCCAGAAAGGCCAAAACAAAATTGCTCAAGGAGAATGGTCCACCAAAACAAGCAGGGGTAAAACGCAAGCTTGATAGTCGTACTCCAGACAGTTCCCTACGTAGCAAAAAAACCAAAAAGAACAGGTAG 1497 0.4375 MGKKKSKDSPQTDTVSSPSSIFTKLFSTAPEQSTAASLFSDDNPFRRKPAPLSDSTNHTESPNNVAPVNPDADEEKKRKRHKEKAPTPPLDSDPVIEVSKKSEKKRKRLSDEGRERDPNLAAEAIGKRKRKRDEVEKEWEEKKYGAVENGANEGIENKTVGSKRKTLDDPADMMVSKEGFDDEDKLLRTIFVGNLPLKVKKKTLLKEFKKFGEVESVRIRSVPIQDTKKPRKGAILAKKINDAADSVHAYVVFKTEQSAQASLSHNMTLVEGNHIRVDRACPPRKKHKGESVPLYDNERTVFVGNLPFDVKDEEVYQLFCGISNTESNIEAVRVIRDPHLSVGKGIAYVLFKTKEAAKFVVKKRNLKLRDRELRLSRAKADATPSKRPNPSSSQAPSTPAKRLAVASRSPSSSNNRSNRKPNTSYQGLRATKSDVHKKVPGGEKPKERKTKRPTVAARKAKTKLLKENGPPKQAGVKRKLDSRTPDSSLRSKKTKKNR 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00969 498 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 188 282 IPR000504 GO:0003723
Cca06g00969 498 CDD RRM1_RBM34 188 278 IPR034220 -
Cca06g00969 498 MobiDBLite consensus disorder prediction 385 430 - -
Cca06g00969 498 Gene3D - 294 387 IPR012677 -
Cca06g00969 498 MobiDBLite consensus disorder prediction 431 450 - -
Cca06g00969 498 PANTHER RNA-BINDING PROTEIN 34 40 496 - -
Cca06g00969 498 MobiDBLite consensus disorder prediction 460 492 - -
Cca06g00969 498 MobiDBLite consensus disorder prediction 70 88 - -
Cca06g00969 498 CDD RRM2_RBM34 300 376 IPR034221 -
Cca06g00969 498 Gene3D - 184 288 IPR012677 -
Cca06g00969 498 SUPERFAMILY RNA-binding domain, RBD 296 394 IPR035979 GO:0003676
Cca06g00969 498 MobiDBLite consensus disorder prediction 372 498 - -
Cca06g00969 498 SUPERFAMILY RNA-binding domain, RBD 181 288 IPR035979 GO:0003676
Cca06g00969 498 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 301 373 IPR000504 GO:0003723
Cca06g00969 498 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 190 232 IPR000504 GO:0003723
Cca06g00969 498 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 40 496 - -
Cca06g00969 498 SMART rrm1_1 189 278 IPR000504 GO:0003723
Cca06g00969 498 SMART rrm1_1 300 376 IPR000504 GO:0003723
Cca06g00969 498 MobiDBLite consensus disorder prediction 50 66 - -
Cca06g00969 498 MobiDBLite consensus disorder prediction 11 40 - -
Cca06g00969 498 MobiDBLite consensus disorder prediction 96 140 - -
Cca06g00969 498 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 299 380 IPR000504 GO:0003723
Cca06g00969 498 MobiDBLite consensus disorder prediction 1 140 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00969 190 379 Eukaryotic Initiation Factors Gene Family AT1G22760 25.773 1.28e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00969 K14837 - gmx:100809622 731.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00969 06 23421517 23427405 Cca06g00969 06 23421517 23427405 ECH