Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00967 ATGGCCCCTTCCTTCGACACAACCTCTCACACAGTATGCGTCATGGACGCTTCCAGTCATTTCGGCCTCACCCTCGTCCAGACACTCCTCCAAAGGGGCTACACCGTTCACGCCTCCGTTCAAAAATACGGGGAAGAAAACATCTTCAAAGGGGTTTCCGCCAATCCCGATAAGCTCAAGCTTTTTCGATCTGACCCATTTGATTACCATAGCATAGTCGATGCACTACGAGGTTGCTCTGGTTTGTTCTACACCTTCGAACCTCCCCTTGACCAGCCAAATTATGATGAATACATGGCAGACGTGGAAGTAAGAGCTGCACACAATGTGTTGGAAGCATGTGGTCAAACGGAAACAATAGATAAAGTGGTTTTCACATCCTCAGCAACAGCAGTGGTGTGGAGAGAGGATCGCAAGAGCATGGAGGCGGATCTAGATGAGAGACACTGGAGTGATGTGAATTTCTGTCGCAAATTTAAGTTATGGCATGGGGTGTCAAAAACAATGGCTGAGAAGAGCGCGTGGGCCTTGGCGATGGACAGAGGAGTGAATATGGTGTCCATCAACGCAGGATTATTGATGGCTGATGATCTATCTCTCAAACATCCTTACATGAGAGGAGCCGCTGAGATGTACGAGGACGGGGTTTTCGTCACAGTTGATTTGAGTTTCTTGGTCGATGCCCACATCTGCGTCTACGAGGATGTCTCATCCTACGGTCGTTATTTGTGCTTCAATCACATCATTAACACCCACCAAGACGCCCTTCACCTCGCACGCAAGTTGGCGCCTTCTGCCTCTTCTTCCTTGCCACAAAGTGGCGACTGCGGTAAGAGTTTTATCGAACAGAGAATTAGCAACAAGAAGTTGAACAAATTGATGGTGGATTTCGAGGAGGCTTGA 903 0.4839 MAPSFDTTSHTVCVMDASSHFGLTLVQTLLQRGYTVHASVQKYGEENIFKGVSANPDKLKLFRSDPFDYHSIVDALRGCSGLFYTFEPPLDQPNYDEYMADVEVRAAHNVLEACGQTETIDKVVFTSSATAVVWREDRKSMEADLDERHWSDVNFCRKFKLWHGVSKTMAEKSAWALAMDRGVNMVSINAGLLMADDLSLKHPYMRGAAEMYEDGVFVTVDLSFLVDAHICVYEDVSSYGRYLCFNHIINTHQDALHLARKLAPSASSSLPQSGDCGKSFIEQRISNKKLNKLMVDFEEA 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00967 300 Pfam 3-beta hydroxysteroid dehydrogenase/isomerase family 17 172 IPR002225 GO:0003854|GO:0006694|GO:0016616
Cca06g00967 300 Gene3D - 4 300 - -
Cca06g00967 300 CDD FR_SDR_e 12 295 - -
Cca06g00967 300 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 265 IPR036291 -
Cca06g00967 300 PANTHER CINNAMOYL-COA REDUCTASE-LIKE SNL6 6 299 - -
Cca06g00967 300 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 6 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00967 Cca-Chr6 23400967 23403385 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00967 11 297 Monolignol Biosynthesis Gene Families AT5G58490 31.148 8.13e-38 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00967 - - gmx:100793329 549.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00967 06 23400967 23403385 Cca06g00967 06 23400967 23403385 ECH