Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00966 ATGCAAACGCCCACCAATGTCTTCGCTAAACTCAAACCGGAGAACTCCCAAACGCTACCGCCACCGCCACCGGCGCCGCATATCACCCcgtcggcgctcatcgtcttcaccgtcgccgtcgtcgtcttctgcttcgtGGGGTTCAGCTTCCTCTTCTTCTGCAGGTGTTGCTTCGTCAACATCTCAGCGTCAAACACGCTCCTTCGTCTCTCTCCCAATGCTTCTCCTTATAGGGGGCTCGACCCTTCTCTTCTGCAAGCGTTTCCCACGTTCCTCTACGCCGCCGTGAAGGATCTCCGCAAGGAGAAGAAGTACTCGTTGGAATGCGCCATTTGTTTGTTGGAGTTCGACGAAGATAGCATGCTGAGACTCTTAAACGTTTGCTACCACGTTTTCCACCAAGAGTGCATTGACCTATGGCTCCGTTCTCACAAGACTTGCCCCGTTTGTCGCACGGATCTTGAGCTACAAACCAACGAATTGCAGAAGCCTCAGGAACACGACGGGGAGAATCTCCACCGTGCAGAAGAAGAGCACGTGGATCACGTGTGCATTGACGTGAAAGAAGGTGATGCGGATGGGACACGTAGCGGTGGTGATGACGTCGAGGATGTGAACATGCAGCAGCAGAAGTTTGCACGGTCGCACTCGACGGGGCATTCCATTGTTATGGTTAGAGAAGGAGATGAAGGAAGAGACGGTGGTGATGATGATGATAAATACACGTTGAGATTGCAGGAGCATGTGGAGTTGAAAATTTTAAAGGGAGGGCACGGTTACTCCAAGAGTTGTTCTAGTTACAGAGATATGGCGAGGCTTGCTGCGCCTTGCAGTAATTGTGGTTATGTTCAAACTGTATTTGATAGCTCTTCGCTTAATGGGATTAAAAATATTTAA 897 0.4727 MQTPTNVFAKLKPENSQTLPPPPPAPHITPSALIVFTVAVVVFCFVGFSFLFFCRCCFVNISASNTLLRLSPNASPYRGLDPSLLQAFPTFLYAAVKDLRKEKKYSLECAICLLEFDEDSMLRLLNVCYHVFHQECIDLWLRSHKTCPVCRTDLELQTNELQKPQEHDGENLHRAEEEHVDHVCIDVKEGDADGTRSGGDDVEDVNMQQQKFARSHSTGHSIVMVREGDEGRDGGDDDDKYTLRLQEHVELKILKGGHGYSKSCSSYRDMARLAAPCSNCGYVQTVFDSSSLNGIKNI 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00966 298 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 157 IPR013083 -
Cca06g00966 298 SUPERFAMILY RING/U-box 102 159 - -
Cca06g00966 298 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Cca06g00966 298 PANTHER RING-H2 FINGER PROTEIN ATL29 17 271 - -
Cca06g00966 298 Pfam Ring finger domain 108 151 IPR001841 -
Cca06g00966 298 CDD RING-H2_EL5_like 108 151 - -
Cca06g00966 298 SMART ring_2 109 150 IPR001841 -
Cca06g00966 298 PANTHER RING FINGER DOMAIN-CONTAINING 17 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00966 Cca-Chr6 23369853 23370809 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00966 16 255 Rapid Response to Elicitors AT3G05200 36.863 1.06e-38 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00966 - - ccaj:109800443 565.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00966 06 23369853 23370809 Cca11g00813 11 15479756 15480804 PCT