Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca06g00965 | ATGGCTTCTCTAGGCAACCCAAAAAGTTGGGTTCCATACATGGACAACAAAGACTGTTCTCAAGGATTTTGTAGCTTGTATTGTCCACAGTGGTGTTATGTTATCTACCCTCCTCCTCCTCCCTTTGAATTTCCTAACGATGATTCAAGTCCAAATTTCTCCCCTCTAGTTATTGCAGTAATCGGGGTCTTGGCCAGTGCTTTTCTCCTGGTGAGTTACTACACCATAATATCCAAGTTCTGTGGCAGCAGAGAATCTTCACAAAGCGAAGACCACGAAGAAAACGTTGAATTGGAAGAGGATCACAACCCTTCACTCCACGAGCCTTGGCATGCTCCCACTATTGGCTTAGATGAGGCCTTGATCAAGTCCATAACAGTTTGCAAGTACAAGAAAGGTGAAGGGTTGGTTGAGGTAACAGATTGCCCCGTTTGTCTCAGCGAGTTTCAAGATGATGAAAGTGTTAGACTCTTACCTAAATGCAGTCACGCTTTTCATCTTCCGTGCATTGACACGTGGCTCAAATCTCACTCTAGTTGCCCTCTATGCCGTGCTAGCATATTCACCTTCAACGCTGCAGCACTTCATGTTGCTGCCCCCGTCATGGAGCTTCCTTCAAGGAGCGAAACTTCTTCACAAAACCAACATGCAGATGAAAACGTGGCAACAAGGCAGAGTGAATTGGATGATGCTGTGGAAGAAGTGTCACGTGGTGGAGAAGTTCCTAAGACTGCATTGCGTGCTTTGAGTGATCTAGGGAATTTGAGAGGAAGGCATAGTGTGATTGAGATTAGAGATGGAGGGTATGATTCCATTAGAAGGACGGTTTCTATGGATCATTCGTTTCAAAGTGGTACTGGTCTTTCAGTTGGTGATGTTCTGCATGTGCATCAAGAGCCATCAAAGGGATCAAATTCAAGAGGTGAAAGTAGCAAGTCTAGCTATAGAAGAAGGGTTTTGCATTGTGTTTTGAGTCCAATTGCAATGAAGAGATCATTTTCAAGTGGAAGATTCTCACTTAGCAGAAGTGGCAGAGGAAGGCAAGGGATTTTGCCTGTCTGA | 1062 | 0.4463 | MASLGNPKSWVPYMDNKDCSQGFCSLYCPQWCYVIYPPPPPFEFPNDDSSPNFSPLVIAVIGVLASAFLLVSYYTIISKFCGSRESSQSEDHEENVELEEDHNPSLHEPWHAPTIGLDEALIKSITVCKYKKGEGLVEVTDCPVCLSEFQDDESVRLLPKCSHAFHLPCIDTWLKSHSSCPLCRASIFTFNAAALHVAAPVMELPSRSETSSQNQHADENVATRQSELDDAVEEVSRGGEVPKTALRALSDLGNLRGRHSVIEIRDGGYDSIRRTVSMDHSFQSGTGLSVGDVLHVHQEPSKGSNSRGESSKSSYRRRVLHCVLSPIAMKRSFSSGRFSLSRSGRGRQGILPV | 353 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca06g00965 | 353 | ProSiteProfiles | Zinc finger RING-type profile. | 142 | 184 | IPR001841 | - | |
Cca06g00965 | 353 | PANTHER | RING-H2 FINGER PROTEIN ATL51-RELATED | 1 | 344 | IPR044675 | - | |
Cca06g00965 | 353 | MobiDBLite | consensus disorder prediction | 206 | 221 | - | - | |
Cca06g00965 | 353 | MobiDBLite | consensus disorder prediction | 222 | 237 | - | - | |
Cca06g00965 | 353 | PANTHER | RING-H2 FINGER PROTEIN ATL53-RELATED | 1 | 344 | - | - | |
Cca06g00965 | 353 | CDD | RING-H2_PA-TM-RING | 141 | 184 | - | - | |
Cca06g00965 | 353 | SUPERFAMILY | RING/U-box | 124 | 190 | - | - | |
Cca06g00965 | 353 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 117 | 191 | IPR013083 | - | |
Cca06g00965 | 353 | MobiDBLite | consensus disorder prediction | 206 | 239 | - | - | |
Cca06g00965 | 353 | Pfam | Ring finger domain | 141 | 184 | IPR001841 | - | |
Cca06g00965 | 353 | SMART | ring_2 | 142 | 183 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca06g00965 | Cca-Chr6 | 23359065 | 23361061 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca06g00965 | 1 | 195 | C3H Transcription Factor Family | AT3G03550 | 52.830 | 1.85e-67 | 214 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca06g00965 | - | - | gmx:100792267 | 581.637 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca06g00965 | 06 | 23359065 | 23361061 | Cca06g00965 | 06 | 23359065 | 23361061 | ECH | |
Cca06g00965 | 06 | 23359065 | 23361061 | Cca11g00809 | 11 | 15397166 | 15398974 | PCT |