Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00965 ATGGCTTCTCTAGGCAACCCAAAAAGTTGGGTTCCATACATGGACAACAAAGACTGTTCTCAAGGATTTTGTAGCTTGTATTGTCCACAGTGGTGTTATGTTATCTACCCTCCTCCTCCTCCCTTTGAATTTCCTAACGATGATTCAAGTCCAAATTTCTCCCCTCTAGTTATTGCAGTAATCGGGGTCTTGGCCAGTGCTTTTCTCCTGGTGAGTTACTACACCATAATATCCAAGTTCTGTGGCAGCAGAGAATCTTCACAAAGCGAAGACCACGAAGAAAACGTTGAATTGGAAGAGGATCACAACCCTTCACTCCACGAGCCTTGGCATGCTCCCACTATTGGCTTAGATGAGGCCTTGATCAAGTCCATAACAGTTTGCAAGTACAAGAAAGGTGAAGGGTTGGTTGAGGTAACAGATTGCCCCGTTTGTCTCAGCGAGTTTCAAGATGATGAAAGTGTTAGACTCTTACCTAAATGCAGTCACGCTTTTCATCTTCCGTGCATTGACACGTGGCTCAAATCTCACTCTAGTTGCCCTCTATGCCGTGCTAGCATATTCACCTTCAACGCTGCAGCACTTCATGTTGCTGCCCCCGTCATGGAGCTTCCTTCAAGGAGCGAAACTTCTTCACAAAACCAACATGCAGATGAAAACGTGGCAACAAGGCAGAGTGAATTGGATGATGCTGTGGAAGAAGTGTCACGTGGTGGAGAAGTTCCTAAGACTGCATTGCGTGCTTTGAGTGATCTAGGGAATTTGAGAGGAAGGCATAGTGTGATTGAGATTAGAGATGGAGGGTATGATTCCATTAGAAGGACGGTTTCTATGGATCATTCGTTTCAAAGTGGTACTGGTCTTTCAGTTGGTGATGTTCTGCATGTGCATCAAGAGCCATCAAAGGGATCAAATTCAAGAGGTGAAAGTAGCAAGTCTAGCTATAGAAGAAGGGTTTTGCATTGTGTTTTGAGTCCAATTGCAATGAAGAGATCATTTTCAAGTGGAAGATTCTCACTTAGCAGAAGTGGCAGAGGAAGGCAAGGGATTTTGCCTGTCTGA 1062 0.4463 MASLGNPKSWVPYMDNKDCSQGFCSLYCPQWCYVIYPPPPPFEFPNDDSSPNFSPLVIAVIGVLASAFLLVSYYTIISKFCGSRESSQSEDHEENVELEEDHNPSLHEPWHAPTIGLDEALIKSITVCKYKKGEGLVEVTDCPVCLSEFQDDESVRLLPKCSHAFHLPCIDTWLKSHSSCPLCRASIFTFNAAALHVAAPVMELPSRSETSSQNQHADENVATRQSELDDAVEEVSRGGEVPKTALRALSDLGNLRGRHSVIEIRDGGYDSIRRTVSMDHSFQSGTGLSVGDVLHVHQEPSKGSNSRGESSKSSYRRRVLHCVLSPIAMKRSFSSGRFSLSRSGRGRQGILPV 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00965 353 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Cca06g00965 353 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 344 IPR044675 -
Cca06g00965 353 MobiDBLite consensus disorder prediction 206 221 - -
Cca06g00965 353 MobiDBLite consensus disorder prediction 222 237 - -
Cca06g00965 353 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 1 344 - -
Cca06g00965 353 CDD RING-H2_PA-TM-RING 141 184 - -
Cca06g00965 353 SUPERFAMILY RING/U-box 124 190 - -
Cca06g00965 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 191 IPR013083 -
Cca06g00965 353 MobiDBLite consensus disorder prediction 206 239 - -
Cca06g00965 353 Pfam Ring finger domain 141 184 IPR001841 -
Cca06g00965 353 SMART ring_2 142 183 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00965 Cca-Chr6 23359065 23361061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00965 1 195 C3H Transcription Factor Family AT3G03550 52.830 1.85e-67 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00965 - - gmx:100792267 581.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00965 06 23359065 23361061 Cca06g00965 06 23359065 23361061 ECH
Cca06g00965 06 23359065 23361061 Cca11g00809 11 15397166 15398974 PCT