Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00964 ATGGCAACGTTAGAATCAGCTCTGAGCCTGTTCACGCCTCACCGATATGGTTTCCTTGCGAAAGCAGCGCATGCACCCACCTCCCTTCTCTTCTCTTCCAACCCCTCTTTCAGAACCCCAACACTACGCTTCCACTTATGCTCCGCTTTGCAAGAGCTGCCCACACCAACCCTTCAACCCACAGACAACGTCAAGAAGCTCTACGTCGTTAACTTATCTTGGTCTCTCTCCGCACCAGACATCAAGGACCTCTTTGCCCAATGCGGAACCGTAACCGACGTCGAGATAATAAAGAACAAAGATGGGAGGAGCAAGGGCTATGCCTTCGTTACTATGGCTTCCGGGGAAGAGGCTCAGGCTGCTGTTGATAAATTTGACTCTTATGAATTATCAGGACGGATAATAAGGGTAGAGCTTGCAAAGAGATTCAAGAAAcctcctcctcctccgcctcctccAGGTCCCCGTACTGGAGAGACGCGCCATATAGTTTATGCATCCAACCTTGCATGGAAAGCAAGATCTACCCATCTCAGACAAGTCTTCACTGAAAATTTCAAAACACCAGTTTCAGCCAGGGTTGTATTTGACAGCCCTACTGGTCGATCTGCTGGGTATGGATTTGTTTCTTTTCTTACCAAAGAGGATGCAGAGGCTGCCATTTCTACTGTGGACGGGAAGGAGTTAATGGGACGACCGCTTCGCCTAAAATTCAGtgaaaagaaagataaagaagctggaaatgaaaaagatgaagacaaagttaatgatgctggaagtgaagatgaaaGCCAAGGTTCTGATGCTCAACCGGAAGAATCATAA 825 0.4255 MATLESALSLFTPHRYGFLAKAAHAPTSLLFSSNPSFRTPTLRFHLCSALQELPTPTLQPTDNVKKLYVVNLSWSLSAPDIKDLFAQCGTVTDVEIIKNKDGRSKGYAFVTMASGEEAQAAVDKFDSYELSGRIIRVELAKRFKKPPPPPPPPGPRTGETRHIVYASNLAWKARSTHLRQVFTENFKTPVSARVVFDSPTGRSAGYGFVSFLTKEDAEAAISTVDGKELMGRPLRLKFSEKKDKEAGNEKDEDKVNDAGSEDESQGSDAQPEES 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00964 274 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 164 235 IPR000504 GO:0003723
Cca06g00964 274 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 67 135 IPR000504 GO:0003723
Cca06g00964 274 Gene3D - 48 144 IPR012677 -
Cca06g00964 274 MobiDBLite consensus disorder prediction 233 261 - -
Cca06g00964 274 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 162 241 IPR000504 GO:0003723
Cca06g00964 274 SUPERFAMILY RNA-binding domain, RBD 60 158 IPR035979 GO:0003676
Cca06g00964 274 Gene3D - 145 255 IPR012677 -
Cca06g00964 274 SUPERFAMILY RNA-binding domain, RBD 145 244 IPR035979 GO:0003676
Cca06g00964 274 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 65 142 IPR000504 GO:0003723
Cca06g00964 274 PANTHER CHLOROPLAST, PUTATIVE-RELATED 22 256 - -
Cca06g00964 274 MobiDBLite consensus disorder prediction 233 274 - -
Cca06g00964 274 PANTHER OS02G0815200 PROTEIN 22 256 - -
Cca06g00964 274 SMART rrm1_1 163 237 IPR000504 GO:0003723
Cca06g00964 274 SMART rrm1_1 66 138 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00964 Cca-Chr6 23352125 23356098 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00964 56 268 Eukaryotic Initiation Factors Gene Family AT1G49760 26.389 3.84e-15 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00964 - - gmx:100792275 414.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00964 06 23352125 23356098 Cca06g00964 06 23352125 23356098 ECH