Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00962 ATGGCTATTGAAAACCAAGACACCACTGTCAGGGAAATCAAACCCAAAAACAGGAGAATCATGGGCGCTGGAGGACCTGATGATGAGGACAATAGGTGGCCACCTTGGTTGAAGCCACTGCTGAAAGAAAGTTTCTTTGTTCAATGCAAGTTACATGCTGATTCTCACAAGAGCGAATGCAACATGTATTGTTTGGACTGTATGAACGGCCCCCTCTGCTCTCTCTGCCTCGTCCACCACAGGGATCACCGTGCAATCCAGATTAGGAGGTCTTCCTATCATGATGTGATCAGAGTTTCTGAGATTCAGAAGGTGTTGGACATCACTGGAGTCCAAACCTACATTATCAACAGCGCAAGGGTGGTGTTTTTGAACGAGAGGCCTCAACCAAGGCCAGGGAAAGGAGTCACAAACACTTGTGAAGTTTGCGAGCGTAGCCTTCTTGACTCTTACCGCTTCTGTTCTCTTGGTTGCAAGATTGTTGGAACATCCAAGAACTTCCAGAAGAAAAAGAAGCACCCAGCGGCAATGTCATCAGATTCTGAAGACTCATACAGCAGCAACAGCGCCCATGGCAGGCAGAAAAACTTCAAAGTTCAGAGCTTCACACCTTCCACACCACCCCCAACTTCGGTTAATTACAGAACAGCCAAGAGAAGAAAGGGAATACCACACCGAGCCCCAATGGGGGGACTAATCATAGAATATTAG 711 0.4726 MAIENQDTTVREIKPKNRRIMGAGGPDDEDNRWPPWLKPLLKESFFVQCKLHADSHKSECNMYCLDCMNGPLCSLCLVHHRDHRAIQIRRSSYHDVIRVSEIQKVLDITGVQTYIINSARVVFLNERPQPRPGKGVTNTCEVCERSLLDSYRFCSLGCKIVGTSKNFQKKKKHPAAMSSDSEDSYSSNSAHGRQKNFKVQSFTPSTPPPTSVNYRTAKRRKGIPHRAPMGGLIIEY 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00962 236 Pfam PLATZ transcription factor 89 160 IPR006734 -
Cca06g00962 236 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 8 232 - -
Cca06g00962 236 MobiDBLite consensus disorder prediction 169 225 - -
Cca06g00962 236 CDD Bbox2 49 88 - -
Cca06g00962 236 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 8 232 - -
Cca06g00962 236 MobiDBLite consensus disorder prediction 179 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00962 Cca-Chr6 23328676 23331870 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Cca06g00962 PLATZ 7.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00962 - - gmx:100791221 452.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00962 06 23328676 23331870 Cca06g00962 06 23328676 23331870 ECH
Cca06g00962 06 23328676 23331870 Cca11g00799 11 15222922 15224784 PCT