Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00952 ATGGCCTCCCATGCCTTCACCGACAATGACAAGAACATTGTGTTTCGAAAGCTCAAGGCAAAGTCTGAAAACAAGATGTGTTTTGATTGTAATGCCAAGAACCCAACTTGGGCCTCTGTCACATACGGAATCTTCCTCTGCATTGATTGCTCCGCTGCGCATCGCAGTCTTGGCGTCCACATAAGTTTTGTCAGATCTACAAATCTAGACTCATGGAACCAAGAACAATTAAGAATGATGAGCTTTGGAGGAAACAATCGTGCACGATTTTTCTTTAAGCAACATGGATGGACTGACGGTGGTAAATTAGAGGCCAAATATACATCGAGAGCTGCAGAGTTATACAAACAAATTCTTTCAAAGGAAGTATCTAAGAGTATTATTGAGGAGGCGAGTTCACAATCACCACCTAATGCTTCCCAATCTGCACAAGTTGTTGAAGGACTTCCTCAACTAAAGACTACTGAGTTACTAAAGGAAAATATTATGAACAAGTCTGAAATGCCAAATATCAGTACTTCACCCAGAGCTTCACATACAACAATTTGCAATACTATCAAAAAGCCTATTGGTGCTAAAAAATGTGGCAAGACCGGGGGACTTGGTGCACGAAAGCTTACTAAAAAGTCAAGTGAGTCTCTTTATGAGCAAAAACCAGAAGAAGCTCCATCTTTAGTTACTTCGTCAACAAACAATGATTTGCTTTCAGCGCCATCGCCAACATCTCGATTTGAGTATATGGAAAATGTTCAATCATCTCCTTTGAATTCAAGTTGTGGGGGTAAACGTCTGCTTAGGCAtgcatccttaccagagtcatctagcttctttgcagactttggaatggacaatgatgttccaaataagtttgggtcaaattcctcaaaagtgcaaattcaggaatccaatgaagctagaaagaagttcacaaatgctaaatctatttcctcattccaattttttggagaccaaaacgaggatgcaaatgatgctcaagtcactttgtcaaagttttcgGGTTCGACTGCCATCTCTAGTAGCGATCTTTTTGGTAACTCCACACATAACTCATCCATTGATTTTGCCACTAGTGATCTCCTTAATCGACTATCTACCCAGACACGAAAATATATTTTCTCTTAA 1143 0.3281 MASHAFTDNDKNIVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAAHRSLGVHISFVRSTNLDSWNQEQLRMMSFGGNNRARFFFKQHGWTDGGKLEAKYTSRAAELYKQILSKEVSKSIIEEASSQSPPNASQSAQVVEGLPQLKTTELLKENIMNKSEMPNISTSPRASHTTICNTIKKPIGAKKCGKTGGLGARKLTKKSSESLYEQKPEEAPSLVTSSTNNDLLSAPSPTSRFEYMENVQSSPLNSSCGGKRLLRHASLPESSSFFADFGMDNDVPNKFGSNSSKVQIQESNEARKKFTNAKSISSFQFFGDQNEDANDAQVTLSKFSGSTAISSSDLFGNSTHNSSIDFATSDLLNRLSTQTRKYIFS 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00952 380 MobiDBLite consensus disorder prediction 222 240 - -
Cca06g00952 380 Pfam Putative GTPase activating protein for Arf 14 112 IPR001164 GO:0005096
Cca06g00952 380 MobiDBLite consensus disorder prediction 197 240 - -
Cca06g00952 380 CDD ArfGap_ArfGap2_3_like 10 125 - -
Cca06g00952 380 SUPERFAMILY ArfGap/RecO-like zinc finger 14 126 IPR037278 -
Cca06g00952 380 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD9-RELATED 8 378 - -
Cca06g00952 380 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 8 378 - -
Cca06g00952 380 SMART arf_gap_3 12 128 IPR001164 GO:0005096
Cca06g00952 380 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 117 IPR001164 GO:0005096
Cca06g00952 380 Gene3D Arf GTPase activating protein 2 143 IPR038508 -
Cca06g00952 380 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Cca06g00952 380 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Cca06g00952 380 PRINTS HIV Rev interacting protein signature 64 85 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00952 Cca-Chr6 23232314 23239221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00952 15 85 C2H2 Transcription Factor Family AT3G07940 48.611 6.24e-19 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00952 K12493 K11855 gmx:100785169 521.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00952 06 23232314 23239221 Cca06g00952 06 23232314 23239221 ECH
Cca06g00952 06 23232314 23239221 Cca11g00797 11 15198697 15209157 PCT