Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00951 ATGAACCTGTGGACGGACGAGAACTCTTCGGTCATGGAGGCTTTCATGTCCGCCTCCGATCTCTCCCCCATATGGCCGCCGCCGGCGCCGCCACAGTCCACGGCGGCCTTCAACCAGGACACGCTCCAGCACCGCCTCCAGGCGCTCATCGAGGGCGCCAGAGAGAGCTGGACCTACGCCATCTTCTGGCAGTCCTCCTACGACTACTCCGGCTCCTCCCTCCTCGGCTGGGGCGACGGTTACTACAAGGGCGACGACGAcaaggccaaggccaaggccaaagccaaggccaCCTCCGCCGCCGAGCAGGACCACCGCAAGAAGGTCCTCCGCGAACTCAACTCCCTCATCTCCGGCTCCTCCTCCGCCGCAGGAGACGACGTCGACGAAGAGGTCACCGACACCGAGTGGTTCTTCCTCGTCTCCATGACTCAGTCCTTCGTGAACGGCGCTGGCTTGCCCGGGCAAGCCTTCTTCAACTCCGCCCCCGTTTGGGTCTCCGGCGGCGACCGCCTCTCGGCCTCGCCGTGCGAGAGGGCGCGTCAGGGACAGGTGTTCGGGCTCCAAACCCTAGTTTGCATACCGTCGCAAAACGGCGTCGTTGAGCTGGGCTCCACTGAGTTAATTTACCAGAACCCGGATCTGACGAACAAGGTGAAGGTTCTTTTCAATTTTAGTAATAACAACTTGGATGTTGCTTCTTCTTGGCCTGCTACCACTACCAGCGCCGATCAAGGAGAGAACGACCCTTCCTCTCTCTGGCTCAACGATCCCGAGGTTAGGGATTCTATCAACACGGTTGCACCCACCCCTTCGGTTTCCCTTCCTGTTAATACTCAGGGAATCTCCAAGACCATTCAATTGGAAACTTCTATTCAAACCCCGGGTTCCAGTACTTTAACTGAAACCCCAAGCTCTATCCACGCGATTCCGCACAACCAGAGCGTTTTCTCCAGGGAACTCAACTTCTCTGAGTACGCCTTTGACCCCAAGACTGGTAGCAACCACAACCACCATTCCCTGAAGCCCGAATCCGGCGAGATTCTCAGCTTTGGAGAAAGCAAGAGGACCTCTTACGCTGCCGGCGTCAATGGGAATTCCAATTCCAATTCAAATTCCCATTTTTTCTCCGGTCACTCACCGTTTGTTGCTGCTGCGGATGAGaacaacaccaccaccaccaccaacaacaacaaTGGGAAGAGAAGGTCTCCGAATTCACGCGGGAGCAACGACGACGGAATGCTTTCCTTCACCTCCGCTGTGATTCTCCCGGCCACCAATTTGAAGTCCTCCGCCACCGGCGGCGGCGATTCCGACCACTCCGATCTGGAGGCTTCCGTGGTGAAGGACCCTGTGGTGGAGCCGGAGAAGCGGCCACGGAAGAGAGGGAGGAAGCCGGCGAACGGAAGAGAGGAACCGTTGAACCATGTGGAAGCTGAGAGACAGAGGAGGGAGAAGCTGAATCAGAGATTCTACGCGCTTCGTGCTGTGGTTCCCAATGTTTCGAAGATGGACAAAGCGTCGCTTTTGGGTGACGCCATATCTTACATCACGGAGCTGAAGTCGAAGCTCCAAACCCTTGAATCGGATAAAGATGGTTTGCAGAAGCAACTCGATGGTGTGAAGAAAGAACTCGAGAAAGCCACTGAAAGTGTTTCTCTTAATCACGCAGTTAATAGTAATAACAAGTCGTCCTCGAATCAGGCTTTAATTGACTTGGATATTGATGTGAAGATTATTGGGTGGGACGCGATGATAAGGATCCAATGCAGCAAGAAGAACCACCCCGCGGCGAGGTTGATGGCGGCGCTGATGGAGTTGGACTTGGACGTGCACCACGCGAGTGTGTCTGTGGTGAACGATTTGATGATTCAACAAGCGACGGTGAAGATGGGAAGTCGGTTTTACACGCAGGAGCAACTTCGTACGGCGCTGTCGGCTAAGGTTGGGGATGTACGATAA 1965 0.5364 MNLWTDENSSVMEAFMSASDLSPIWPPPAPPQSTAAFNQDTLQHRLQALIEGARESWTYAIFWQSSYDYSGSSLLGWGDGYYKGDDDKAKAKAKAKATSAAEQDHRKKVLRELNSLISGSSSAAGDDVDEEVTDTEWFFLVSMTQSFVNGAGLPGQAFFNSAPVWVSGGDRLSASPCERARQGQVFGLQTLVCIPSQNGVVELGSTELIYQNPDLTNKVKVLFNFSNNNLDVASSWPATTTSADQGENDPSSLWLNDPEVRDSINTVAPTPSVSLPVNTQGISKTIQLETSIQTPGSSTLTETPSSIHAIPHNQSVFSRELNFSEYAFDPKTGSNHNHHSLKPESGEILSFGESKRTSYAAGVNGNSNSNSNSHFFSGHSPFVAAADENNTTTTTNNNNGKRRSPNSRGSNDDGMLSFTSAVILPATNLKSSATGGGDSDHSDLEASVVKDPVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYITELKSKLQTLESDKDGLQKQLDGVKKELEKATESVSLNHAVNSNNKSSSNQALIDLDIDVKIIGWDAMIRIQCSKKNHPAARLMAALMELDLDVHHASVSVVNDLMIQQATVKMGSRFYTQEQLRTALSAKVGDVR 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00951 654 Coils Coil 518 552 - -
Cca06g00951 654 MobiDBLite consensus disorder prediction 443 482 - -
Cca06g00951 654 PANTHER MYC 26 650 IPR045084 GO:0003700|GO:0006355
Cca06g00951 654 MobiDBLite consensus disorder prediction 389 415 - -
Cca06g00951 654 MobiDBLite consensus disorder prediction 429 482 - -
Cca06g00951 654 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 472 521 IPR011598 GO:0046983
Cca06g00951 654 PANTHER TRANSCRIPTION FACTOR MYC2 26 650 - -
Cca06g00951 654 Gene3D - 464 553 IPR036638 GO:0046983
Cca06g00951 654 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 475 540 IPR036638 GO:0046983
Cca06g00951 654 Pfam Helix-loop-helix DNA-binding domain 476 521 IPR011598 GO:0046983
Cca06g00951 654 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 42 223 IPR025610 -
Cca06g00951 654 CDD bHLH_AtAIB_like 469 545 - -
Cca06g00951 654 SMART finulus 478 527 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00951 Cca-Chr6 23198174 23201820 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00951 1 651 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 53.779 0.0 626
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca06g00951 bHLH-MYC_N 9.5e-55 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00951 K13422 - gmx:100776289 996.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00951 06 23198174 23201820 Cca06g00951 06 23198174 23201820 ECH