Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00937 ATGTCGCCGGCGGCGGTGGTTGCGGAGGAGGACGGGCGGAGCAAAGGGTCGTCGACCGTAGCATCCGGTTCTTCGCAATCCCTAGACTGTTTCTCTCAGAATGGGGCTGGATTGAAAGAACGGAATTATTTAGGGTTGTCTGATTGCTCATCAGTGGATAGCTGTGCTTCTACTGTGCCAAGCTTGTGTGATGAGAAAAAGGAGAACATGAATTTGAAGGCTACAGAGTTGAGGCTGGGTCTTCCCGGATCCCAATCACCTGTTAGAGATCCGGATCTTTACACTTTAAGCTCAGCCGCGCTTGATGAGAAGCCACTGTTCCCTTTGCTTCCGACTAAAGACGGAATATGCTCTTTGCAGAAAACAGGGACAACTGTTGTTTCGGGCAACAAAAGAGGTTTTGCTGATACCATTGATGGGTTTTCTCAGGCGAAGTTTACTGGTAGTACGGGGATGAGCACAATGCTATCACCTAGGCCTTCTGGAGCTCAGCCTTCTGCAATGAAAGAAATGCCAAACAAGTTGCAAGAACGGCCTTGTCAAACTAACAATGGAACTAGTCATAACCATGCAGGTGCTTCTGTCAGTGGCAGTGCTCCGGCTTCTAAGGCACAGGTTGTTGGTTGGCCTCCTATTAGATCATTTAGGAAAAACTCGATGGCCACAACCTCCAACAAGAACAATGATGAAGTGGATGGTAAACCAGGTGTTGGTGCACTCTTTGTGAAGGTCAGCATGGATGGTGCTCCCTATCTTAGAAAGGTAGATCTAAGAAGTTATACAACATATCAGGAACTATCTTCTGCCCTTGAGAAGATGTTCAGCTGTTTTACCCTAGGTCAGTGTGGTTCCCATGGAGCTCCTGGAAGAGAAATGTTGAGTGAGAGCAAGCTGAGAGATCTTCTGCACGGTTCAGAGTATGTCCTCACTTACGAGGATAAAGATGGAGACTGGATGCTTGTAGGAGATGTACCATGGGAAATGTTCATTGACACTTGCAAAAGGCTGAAAATTATGAAAGGTTCTGATGCCATTGGCTTAGCTCCCAGGGCCATGGAGAAGTCCAAAAGCAGGAGTTAG 1080 0.4731 MSPAAVVAEEDGRSKGSSTVASGSSQSLDCFSQNGAGLKERNYLGLSDCSSVDSCASTVPSLCDEKKENMNLKATELRLGLPGSQSPVRDPDLYTLSSAALDEKPLFPLLPTKDGICSLQKTGTTVVSGNKRGFADTIDGFSQAKFTGSTGMSTMLSPRPSGAQPSAMKEMPNKLQERPCQTNNGTSHNHAGASVSGSAPASKAQVVGWPPIRSFRKNSMATTSNKNNDEVDGKPGVGALFVKVSMDGAPYLRKVDLRSYTTYQELSSALEKMFSCFTLGQCGSHGAPGREMLSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCKRLKIMKGSDAIGLAPRAMEKSKSRS 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00937 359 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 17 352 IPR003311 GO:0005634|GO:0006355
Cca06g00937 359 ProSiteProfiles PB1 domain profile. 239 343 IPR000270 GO:0005515
Cca06g00937 359 MobiDBLite consensus disorder prediction 15 29 - -
Cca06g00937 359 Gene3D - 235 353 - -
Cca06g00937 359 PANTHER AUXIN-INDUCED PROTEIN 17 352 - -
Cca06g00937 359 Pfam AUX/IAA family 75 350 IPR033389 -
Cca06g00937 359 MobiDBLite consensus disorder prediction 176 201 - -
Cca06g00937 359 MobiDBLite consensus disorder prediction 149 203 - -
Cca06g00937 359 SUPERFAMILY CAD & PB1 domains 238 340 - -
Cca06g00937 359 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00937 Cca-Chr6 22963500 22968577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00937 241 344 B3 DNA Binding Superfamily AT5G37020 32.692 3.71e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Cca06g00937 AUX_IAA 1e-90 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00937 K14484 - gmx:547502 642.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00937 06 22963500 22968577 Cca11g00785 11 14685027 14690177 PCT