Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00934 ATGGAGCTTTCTCAACTTGGTTTTCTGGATGAGCTACTTGCTCCAAGAAAAGACACTTGGAGTGCTTTGTCCTCTGGTTTGAATGAGTTACTCCCTAGTGGTTGGAGCTTTGACTCTTTTGATGACAACCAAGGTTTAGGCACTTTCAATCCCTCATTTGCTGCATTTTCAACTCCACTAGACCATAGATTTGAATGTCCTTATGGAAGTGAAGCATCATACCCTTTTGTTGATGGGTTCACATTGCCAGAGCTTGATTCATCATACACCAGGAATGATGAGTCAGTACCACTTTTGCCTCAAGAAGATAACCCCTCATTGGAGGATGAAGAGTTTGGCTTTCTGGGGAGTGATAACCAGAGTTTGGAACAAGCAACAAATGGCTGCAAAATTGAGGAACAAGTGACAGAGATTCCAGTCTTCAACATGGGCATGTGTGGAGAGAAAAAGCCCAAATCCAAAAAACTTGAAGGGCAGCCCTCAAAGAATCTCATGGCAGAGAGAAGGAGAAGAAAGCGTTTGAATGATCGCCTCTCCATGCTAAGGTCTATAGTCCCTAAGATTAGCAAGATGGATAGGACCTCCATTCTTGGAGATACCATTGATTACATGAAAGAGCTTCTAGAAAGGATAGGTAAGTTGCAAGAAGAGGAAATGGAGGAGGGAACAAATCAGATAAACCTCTTAGGCATTTCTAAGGAGCTAAAGCCAAATGAAGTAATGTTTGATGTTGAGAGAAGAGACCAGGACACAAGGATCAGCATCTGCTGTGCCACAAAGCCAGGATTACTACTGTCCACAGTGAACACCTTAGAAGCATTAGGCCTTGAGATTCACCAGTGTGTTATAAGCAGCTTCAATGATTTTTCAATGCAAGCCTCTTGCTCGGAGGCAGCAGAGCAGAGAAATTGTATGAGCCCGGAAGAGATAAAGCAAGCACTATTCAGAAATGCAGGTTATGGTGGGAGATGTCTCTAG 978 0.4325 MELSQLGFLDELLAPRKDTWSALSSGLNELLPSGWSFDSFDDNQGLGTFNPSFAAFSTPLDHRFECPYGSEASYPFVDGFTLPELDSSYTRNDESVPLLPQEDNPSLEDEEFGFLGSDNQSLEQATNGCKIEEQVTEIPVFNMGMCGEKKPKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEEEMEEGTNQINLLGISKELKPNEVMFDVERRDQDTRISICCATKPGLLLSTVNTLEALGLEIHQCVISSFNDFSMQASCSEAAEQRNCMSPEEIKQALFRNAGYGGRCL 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00934 325 Pfam Helix-loop-helix DNA-binding domain 164 207 IPR011598 GO:0046983
Cca06g00934 325 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 218 IPR036638 GO:0046983
Cca06g00934 325 Gene3D - 150 223 IPR036638 GO:0046983
Cca06g00934 325 PANTHER - 2 325 - -
Cca06g00934 325 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 325 - -
Cca06g00934 325 CDD ACT_UUR-ACR-like 251 292 - -
Cca06g00934 325 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 158 207 IPR011598 GO:0046983
Cca06g00934 325 SMART finulus 164 213 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00934 Cca-Chr6 22925800 22928056 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00934 149 325 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 67.978 2.56e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca06g00934 HLH 6.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00934 - - gmx:100806571 603.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00934 06 22925800 22928056 Cca11g00782 11 14551284 14553340 PCT