Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00928 ATGACTCAAGCCAATGGCCATCGTGTTGAGACAGTGATTGACATAAAGAAACCCGTGAGTTTCACCGGGGGTCTCACGTTTGAGTGCCTCACGTACACTGTGACAAAGAAGAACAAGGTTGAGGGGAAGTGGTTGAGTGAAGAGGTGGATTTGTTGCATGACATCACTAGTTATGCACCAAAGGGTTGCATCACTGCAGTGATGGGTCCTAGTGGTGCAGGAAAATCCACTCTCTTGGATGGCCTTGCTGGGAGGATTGCAAGTGGGAGCCTCAAAGGGAAGGTGTCCTTGGATGGAGCAACTGTGAGTGCAAGTTTGATCAAAAGAACTTCTGCATATATCATGCAGGATGATAGGCTTTTTCCAATGCTAACTGTCTATGAGACTTTCATGTTTGCTGCTGATTTTCGCCTGGGGCCACTCTCACTTGCTGATAAGAAGCAGAAGGTGGAGAAGCTCATTGATCAGCTTGGCTTAACTTCCTCTCGTAACACGTACATAGGAGACGAAGGCACGAGAGGGGTCTCCGGCGGAGAGCGGCGGCGAGTCTCAATCGGCGTGGACATCATCCACGGACCATCGCTCCTCTTCCTGGACGAGCCAACATCAGGACTAGACTCCAGCAGCGCACACAGCGTGATAGAGAAAGTGCACGACATCGCACGCAGCGGCAGCACCGTcatcctcaccatccaccagccatcatccagaatccaactcctcctcgaccacctcatcatccTCGCACGGGGCCAGCTCATGTTCCAAGGCTCACCCCATGACGTCACTCAACACTTAGCTCGCATGCCACGCAAGATTCCCAAAGGAGAGAACCCCATTGAGCTTCTCATTGATGTCATCCAAGAGTATGATCAATCTGACTTTGGAGTTGAGGCTCTTGCTGAGTTCGCTCGCACGGGGCTTAAGCCCCCTCCTTTGTCCACTCACGGCCACCACGAACACTCGCCGTTGCCTGCACCTTCCTCGCACCGGAGTCACATATTTGAGGGAAAATCTCAGGACTTCTCTCACTCCCCGCAACTCAGTAGAAGGGTCGTTGATGAGTTTGATCACAGTCTCAGGAGTCCGTATAACAACATTTCCACGTCATGGAGCGCTGGTCACAGTGCAGCCTTTCTGAAATTCACACCTTCAAAACTTAAGAATGATCAAAAGCCGCGGAATAACGCAAGAAATGCTTCACCTATGTACTACACATACTCGAGTGAAATCCTTCAAGCCACTCCAACACCGCATAGCAGTGACTACACAGTGAATGAGAAGGACTACCTGACTCCCTCAAATGGGATACAAGAACACCTTGGTCCAAAGTTTGCAAATTCTTACCTAACAGAGATTTGGACGCTGATGCGGCGGAACTTCATAATCATCAGGCGCACCCCAGAGCTTTTCCTCTCAAGACTCATGGTGCTCACCTTCATGGGCGTCATGATGGCCACCATGTTCCACAACCCTAAAGAAGACTTGCAAGGAATCACAAACCGCCTCAGCTTCTTCATCTTCACAGTGTGCCTCTTTTTCTTCTCTTCCAACGATGCTGTCCCAGCCTTCATCCAAGAAAGGTTCATCTTCATTAGGGAAACTTCTCACAATGCCTATAGGGCTTCCACTTACACCTTTGCAGGCATAATCACTCACATGCCATTTATTCTTCTCCAAGCCACTGCCTATGCACTCATTGTTTGGTTTGCCCTAGAGCTTCGAGGCCCTTTCTTTTACTTTTTGCTAGTTCTCTTCGTTTCTCTTCTGTCCACCAATTCCTTTGTTGTTTTTGTGAGCTCAGTGGTCCCGAACTACATCTTAGGTTATGCTGTGGTTATTGCCTTCACTGCCTTGTTCTTCTTGTTCTGTGGATACTTCTTGAACAGCCATGACATTCCACCTTATTGGCGTTGGATGAACAAAATTTCAACCATGACGTACCCTTATGAGGGGCTATTGATGAACCAGTACCAGACCAATTATACCTTTGGGAAGATAGATGGAGCAAACGTTACCGGTTTTAATATCTTGGATAGTCTTCATATTGGGACTCAAGAGTATAAGAAGAGGACAATCGTGCTTGTAATGTTTGGTTGGGCTGTGCTATATAGGATTTTATTTTACTTGGTTCTTCGTTTTGCATCAAAAAACCAGAGGTCGTAG 2166 0.4645 MTQANGHRVETVIDIKKPVSFTGGLTFECLTYTVTKKNKVEGKWLSEEVDLLHDITSYAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVSLDGATVSASLIKRTSAYIMQDDRLFPMLTVYETFMFAADFRLGPLSLADKKQKVEKLIDQLGLTSSRNTYIGDEGTRGVSGGERRRVSIGVDIIHGPSLLFLDEPTSGLDSSSAHSVIEKVHDIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGSPHDVTQHLARMPRKIPKGENPIELLIDVIQEYDQSDFGVEALAEFARTGLKPPPLSTHGHHEHSPLPAPSSHRSHIFEGKSQDFSHSPQLSRRVVDEFDHSLRSPYNNISTSWSAGHSAAFLKFTPSKLKNDQKPRNNARNASPMYYTYSSEILQATPTPHSSDYTVNEKDYLTPSNGIQEHLGPKFANSYLTEIWTLMRRNFIIIRRTPELFLSRLMVLTFMGVMMATMFHNPKEDLQGITNRLSFFIFTVCLFFFSSNDAVPAFIQERFIFIRETSHNAYRASTYTFAGIITHMPFILLQATAYALIVWFALELRGPFFYFLLVLFVSLLSTNSFVVFVSSVVPNYILGYAVVIAFTALFFLFCGYFLNSHDIPPYWRWMNKISTMTYPYEGLLMNQYQTNYTFGKIDGANVTGFNILDSLHIGTQEYKKRTIVLVMFGWAVLYRILFYLVLRFASKNQRS 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00928 721 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 25 275 IPR003439 GO:0005524
Cca06g00928 721 SMART AAA_5 61 259 IPR003593 -
Cca06g00928 721 MobiDBLite consensus disorder prediction 308 333 - -
Cca06g00928 721 CDD ABCG_EPDR 25 257 - -
Cca06g00928 721 PANTHER ABC TRANSPORTER G FAMILY MEMBER 19 8 715 - -
Cca06g00928 721 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 267 IPR027417 -
Cca06g00928 721 ProSitePatterns ABC transporters family signature. 175 189 IPR017871 GO:0005524
Cca06g00928 721 Pfam ABC transporter 52 203 IPR003439 GO:0005524
Cca06g00928 721 Pfam ABC-2 type transporter 452 658 IPR013525 GO:0016020|GO:0140359
Cca06g00928 721 Gene3D - 37 272 IPR027417 -
Cca06g00928 721 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 8 715 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00928 Cca-Chr6 22859692 22863763 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00928 24 289 Calmodulin-binding Proteins AT2G36910 25.926 4.48e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00928 K05681 - gmx:100804809 1189.1