Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00927 ATGATGGAGTTACCAGATATTTGGATAATAAAACTGGTTGTGGCATGTGCTCTTTGTCTGCATATATTTATCAGATCGGCTTCTGCAATTGAAGGGTTTGAAAACATAGCATGCTGTGCTGATTCAAATTACACAGATCCACGGACCACCTTAAATTATACAACAGATTACAGATGGTTCTCTGATAAAGGAAGTTGCAGAAGAAGAACTGGAACTGGGTTAAATCATAGAGGCAACGAAAAAGTTCGTCTGTTTTTTATAGATGAAGGAAAGAGATGTTACAATTTGCCAACAGTTAAGAATAAAGTATATCTGATAAGGGGCACATTTCCATTCGATAGTGTAAATTCTTCCTTTAATGTTTCAATTGGCGTAACACAACTAGGTGCAGTGAGATCATCCGGGCTCCAGGACTTGGAAATTGAGGGAGTTTTCAGGGCTACCAAAGACTACATAGACTTCTGCTTAGTGAAGGGGGAGTTGGATCCCTTTATTTCTCAGATTGAATTAAGGCCATTGCCTGAAGAGTACCTACATGATTTGCCTGCCAGTGTTTTAAAACTGATAAGCAGAAATAGTCTTTGGGGCACAAAAGATGAAATCAGGTTCCCAATTGACCTAAGTGATAGAATCTGGAAAGCAACTTCAATTCCATCATCTGCTCTTCTATTGTCTAACAATGCAAGCAATTTTGACCTCAAATCCAATGTGACACCACCTCTACAAGTCCTACAAACAGCTCTCAACCATCCTGAGCGATTGCAGTTCAATCACAGTGGCCTTGACATCGAGGATTATGTATATCGCATATTTCTTTACTTCCTTGAATTAAATAGCACTGTCAAACCAGGCAAAAGGGTTTTTGACATCTATGTTAACGGTGAGCTTAAAAAGGAGAGGTTTGACATATTGGCTGGAGGGTCCAACTATACATACACTGTCTTGAACGTTTCAGCAAATGGATTACTTAATATAACCTTGGTCAAGGCATCTGGATCTGAGTTTGGACCCCTTTTGAATTCTTATGAGATCCTGCAGATGCGACCATGGATTGAAGAGACCAACCAAAATGATGTCGAAGTGATTCAGAAGATTAAAAAAGATTTGTTGCTGCAAAACCAAGACAATAAAGCACTGAAGAGTTGGAGTGGAGACCCTTGTTTTCTCCCGTGGAAAGGAATAGCATGTGATGGTTCAAACGGTTCATCTGTTATCACTAAGCTGGATCTTTCCTCAAGTAATTTCAAAGGACCAATTCCTTCTGGTATCACTGAGATGACCAACTTAAAACTACTGAATCTGAGCCACAACAACTTCGATGGTCCTATCCCCTCGTTTCCACTGTCCTCCTTGTTGATATCAATAGATCTGAGCTACAATGATCTTATGGGATCACTTCCAGAATCAATTGTCTCACTGCCATATTTAAAATCATTGTATTTTCGCTGCAACCAACACATGAGCGAAGAGGATCCAGCAAAACTGAACAGTTCACTAATCAATACAGATTACGGAAGATGCAAAGCAAAAGAACCTAGATTTGGACAAGTATTCGTCATCAGTGCTATTGCATGTGGATCACTTTTGATTGCTTTGGCCGTTGGAATCCTTTTTGTTTGCCGCTACAGAAAAAAGTTGATTCCATGGGAAGGATTTGGTGGAAAGAACTACTTAATGGAAACAAATATGATATTCTCTTTGCCCAGCAAAGATGATTTCTTAATAAAATCCTTTGCAATTCAAACATTCACTTTGGAAGATATAGAGATGGCCACAGAGAAGTATAAAACTTTGATAGGTGAAGGAGGGTTTGGCTCTGTTTACCAGGGCACTCTAAACGATGGACAAGAAGTAGCAGTGAAAGTTCGGTCAGCCACATCATCTCAGGGAACTCGAGAATTTGATAATGAGCTAAACCTACTTTCTGCAATACAGCATGAGAACTTGGTGCCTCTTCTTGGTTACTGTAATGAAAATGATCAACAAATTCTTGTGTATCCTTTCATGTCCAATGGTTCTTTGCAAGATAGACTATATGGGGAACCTGCAAAGAGAAAAATATTAGACTGGCCAACTAGACTCTCTATTGCTCTTGGTGCAGCTCGAGGTTTGGCAtatcttcacacgttcccaggccgttcagtaatacacagggacgtgaaatcgagcaatatactgctggatcatagcatgagtgctaaggttgcggattttggtttctcaaaatatgctcctcaggaaggagacagtaatgtttcccttgaagtaagaggaactgcagggtacctggatcctgaGTACTACAAAACCCAGCAGTTATCTGAGAAGAGCGATGTCTTCAGCTTTGGCGTGGTTTTACTTGAAATTGTGAGTGGTAGGGAACCTCTTGACATAAAGAGACCACGAAATGAGTGGAGCTTGGTAGAATGGGCTAAACCATATATAAGAGCATCAAAGGTGGATGAAATTGTGGATCCTGGCATCAAGGGAGGATACCATGCAGAGGCAATGTGGAGAGTGGTGGAAGTAGCACTGCAATGTCTTGAACCCTTATCAGCATATAGACCATGCATGGTTGACATTGTCCGCGAGTTAGAGGATGCTCTCATCATAGAAAACAATGCATCAGAATACATGAAGTCCATAGACAGCCTTGGAGGATCCAACCGCTACTCTATTGTCATAGAGAAAAGGGTGTTGCCCTCAACTTCATCAACAGCAGAATCAACCATCACAACCCAAGCCTTGTCCCACCCACAGCCGAGATAG 2769 0.3803 MMELPDIWIIKLVVACALCLHIFIRSASAIEGFENIACCADSNYTDPRTTLNYTTDYRWFSDKGSCRRRTGTGLNHRGNEKVRLFFIDEGKRCYNLPTVKNKVYLIRGTFPFDSVNSSFNVSIGVTQLGAVRSSGLQDLEIEGVFRATKDYIDFCLVKGELDPFISQIELRPLPEEYLHDLPASVLKLISRNSLWGTKDEIRFPIDLSDRIWKATSIPSSALLLSNNASNFDLKSNVTPPLQVLQTALNHPERLQFNHSGLDIEDYVYRIFLYFLELNSTVKPGKRVFDIYVNGELKKERFDILAGGSNYTYTVLNVSANGLLNITLVKASGSEFGPLLNSYEILQMRPWIEETNQNDVEVIQKIKKDLLLQNQDNKALKSWSGDPCFLPWKGIACDGSNGSSVITKLDLSSSNFKGPIPSGITEMTNLKLLNLSHNNFDGPIPSFPLSSLLISIDLSYNDLMGSLPESIVSLPYLKSLYFRCNQHMSEEDPAKLNSSLINTDYGRCKAKEPRFGQVFVISAIACGSLLIALAVGILFVCRYRKKLIPWEGFGGKNYLMETNMIFSLPSKDDFLIKSFAIQTFTLEDIEMATEKYKTLIGEGGFGSVYQGTLNDGQEVAVKVRSATSSQGTREFDNELNLLSAIQHENLVPLLGYCNENDQQILVYPFMSNGSLQDRLYGEPAKRKILDWPTRLSIALGAARGLAYLHTFPGRSVIHRDVKSSNILLDHSMSAKVADFGFSKYAPQEGDSNVSLEVRGTAGYLDPEYYKTQQLSEKSDVFSFGVVLLEIVSGREPLDIKRPRNEWSLVEWAKPYIRASKVDEIVDPGIKGGYHAEAMWRVVEVALQCLEPLSAYRPCMVDIVRELEDALIIENNASEYMKSIDSLGGSNRYSIVIEKRVLPSTSSTAESTITTQALSHPQPR 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00927 922 Gene3D Transferase(Phosphotransferase) domain 1 669 882 - -
Cca06g00927 922 PANTHER OS05G0525400 PROTEIN 63 883 - -
Cca06g00927 922 SUPERFAMILY L domain-like 372 488 - -
Cca06g00927 922 Gene3D - 199 348 - -
Cca06g00927 922 ProSitePatterns Protein kinases ATP-binding region signature. 599 621 IPR017441 GO:0005524
Cca06g00927 922 SUPERFAMILY Protein kinase-like (PK-like) 574 865 IPR011009 -
Cca06g00927 922 PANTHER OS07G0107800 PROTEIN-RELATED 63 883 - -
Cca06g00927 922 Pfam Malectin-like domain 40 346 IPR024788 -
Cca06g00927 922 Gene3D Ribonuclease Inhibitor 357 511 IPR032675 -
Cca06g00927 922 Pfam Protein tyrosine and serine/threonine kinase 596 865 IPR001245 GO:0004672|GO:0006468
Cca06g00927 922 Pfam Leucine rich repeat N-terminal domain 356 397 IPR013210 -
Cca06g00927 922 ProSiteProfiles Protein kinase domain profile. 593 870 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00927 922 SMART serkin_6 593 870 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00927 922 Gene3D Phosphorylase Kinase; domain 1 566 668 - -
Cca06g00927 922 ProSitePatterns Serine/Threonine protein kinases active-site signature. 715 727 IPR008271 GO:0004672|GO:0006468
Cca06g00927 922 CDD STKc_IRAK 599 866 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00927 Cca-Chr6 22845912 22854314 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00927 19 872 Receptor kinase-like Gene Family AT1G67720 34.602 8.63e-136 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Cca06g00927 Malectin_like 1.1e-42 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00927 - - gmx:100781986 1639.78