Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00924 atgggaagggggaagattgtgattgaaaggatcgacaattccaccagccggcaagtgactttctcaaagaggagaaagggattgatcaagaaagccaaagagctagccattctctgtgatgcacaagttggccttgtgatattctctagcACGGGAAAGCTTTATGAATATGCAAGCACCAGCATGAAATCAATAATCGAGAGGTATACTACATGTAAAGAAGAGCAGCGTCACCATCAGATAAATCCAGAATTTGATGTCAAGTTTTGGCAGAGGGAGGCAGAAACTCTAAGGCAACAATTACAGAATCTACAAGAAAGCTATCGCCAATTGATGGGAGAACAACTTTACGGTCTAAGTGTAAGAAACCTACAAGATCTAGAGAATCAACTGGAAATGAGTCTCCAAGATGTGCGCATGAAAAAGGAACAAATTCTAAAAGATGAAATCCAAGAGCTAAATCGAAAGGGAAGCCTCATCTTTCAAGAAAATGTGGAACTTTTCAAGAAGGTTTATGGTACAATAGATGTGACTACAACAAGCAAAAATCCATTTGTTTCACCTCCATATGGTATAGGTGCAAGGGGATGTCCACAACAAATGGTCGAACTTCAATTGTGCCAGCCTGAGCAAGAAGCTTATGAGACATCGGAAACTGCCACAAAATGA 669 0.3064 MGRGKIVIERIDNSTSRQVTFSKRRKGLIKKAKELAILCDAQVGLVIFSSTGKLYEYASTSMKSIIERYTTCKEEQRHHQINPEFDVKFWQREAETLRQQLQNLQESYRQLMGEQLYGLSVRNLQDLENQLEMSLQDVRMKKEQILKDEIQELNRKGSLIFQENVELFKKVYGTIDVTTTSKNPFVSPPYGIGARGCPQQMVELQLCQPEQEAYETSETATK 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00924 222 Gene3D - 13 88 IPR036879 GO:0003677|GO:0046983
Cca06g00924 222 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cca06g00924 222 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cca06g00924 222 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cca06g00924 222 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cca06g00924 222 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cca06g00924 222 Coils Coil 87 114 - -
Cca06g00924 222 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cca06g00924 222 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca06g00924 222 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Cca06g00924 222 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cca06g00924 222 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 221 - -
Cca06g00924 222 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 221 - -
Cca06g00924 222 Coils Coil 121 144 - -
Cca06g00924 222 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Cca06g00924 222 ProSiteProfiles K-box domain profile. 87 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00924 Cca-Chr6 22818851 22827256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00924 1 220 MADS-box Gene Family AT2G22630 58.120 5.60e-87 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Cca06g00924 K-box 6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00924 K09264 - gmx:100795778 363.229