Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00922 ATGGCCAACCCTTTCGCTGTTTTCCTTATGACATTCTTCTTTTCCCTCTCGCTATTCACCAGCGTCAAATCAGACTCATTCGCTTTCAACTTACCCAGTTTTGAGGCAGATTCTGAAAACGTAATAGTTGCTGCTGATGCCAACATAACAAGTGGAGCTTTACGACTCACCAAAACGGACCTATACGGCAACCCAACTCACCACAGCGTTGGCCTCTCAGCGTTCTTTGGTACAGTTCATCTCTCCGACAGAAAAACTGGGAGAGTCGCAAACTTCCACACCGAGTTCTCCTTTGTGGTGAACACAAAGCGTAAATCACTCCACGGCGATGGCTTCACCTTCTTCATCGCATCAAACGATTTTCGTTTCGCACACAACTCAAGTGGAGGGTTCCTCGGACTTTTCAACAAGGAAACAGCGTTCAACACCTCCTTAAACCAAGTCGTTGCGGTTGAGTTTGATAGCTTCGCGAATGAATGGGACCCTAACTTCCCAGAGTCTGATTCTCCTCACATAGGAATTGACATCAACTCCATTAGGTCAGTGGCAACTGCACCATGGCAACTTGATGTTCAACCAACAGGAACAATAGGAAAGGCACACATAAGCTATCTATCTTCCACCAAAATATTGAGCGTCACCGTGGCTTATCCAACTAGCCCTGTGAATTCAAATGTCACTGTTTTATCGTACCCCGTTAACTTCGGGAGTGTTCTGTCAGAATGGGTCCTTGTTGGTTTCTCTGGTACCACCGGTGACTTGGTTGAAACGCATGACATTCTTTCGTGGTCTTTCAGTTCCTTCTTGTAG 810 0.4617 MANPFAVFLMTFFFSLSLFTSVKSDSFAFNLPSFEADSENVIVAADANITSGALRLTKTDLYGNPTHHSVGLSAFFGTVHLSDRKTGRVANFHTEFSFVVNTKRKSLHGDGFTFFIASNDFRFAHNSSGGFLGLFNKETAFNTSLNQVVAVEFDSFANEWDPNFPESDSPHIGIDINSIRSVATAPWQLDVQPTGTIGKAHISYLSSTKILSVTVAYPTSPVNSNVTVLSYPVNFGSVLSEWVLVGFSGTTGDLVETHDILSWSFSSFL 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00922 269 PANTHER LECTIN 3 269 - -
Cca06g00922 269 Pfam Legume lectin domain 28 267 IPR001220 GO:0030246
Cca06g00922 269 ProSitePatterns Legume lectins alpha-chain signature. 239 248 IPR000985 -
Cca06g00922 269 PANTHER CONCANAVALIN A-LIKE LECTIN FAMILY PROTEIN 3 269 - -
Cca06g00922 269 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 268 IPR013320 -
Cca06g00922 269 CDD lectin_legume_LecRK_Arcelin_ConA 27 269 IPR001220 GO:0030246
Cca06g00922 269 Gene3D - 24 269 - -
Cca06g00922 269 ProSitePatterns Legume lectins beta-chain signature. 149 155 IPR019825 -
Cca06g00922 269 PIRSF Plant_L_lectin 1 269 IPR016363 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00922 Cca-Chr6 22805548 22806390 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00922 1 269 Receptor kinase-like Gene Family AT5G10530 34.559 1.08e-28 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00922 - - gmx:100804280 396.741
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00922 06 22805548 22806390 Cca11g00775 11 14393048 14394069 PCT
Cca11g00776 11 14416695 14417519 Cca06g00922 06 22805548 22806390 PCT