Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00920 ATGAAGGTGGCAAGTCAGAAACAAGTTTCATTCAAATGGTTTGGAATGGCTGTGCAGTTCAGCATAATCATACTCAGTGCCTGTTCTGAGAGGTCATTTAGaagagtttcgacgcctcctcttcctcctccagtgaagctgaatacccaagaTTCTCACGAGGTGGTAATTACTAACGACTATGTTTCCCTCAATGTGGCAAAGCCCGAGGGCTATATCACTGGAATATTTACTGGAATTAACAATGTACTTGACACTGGAATTCATACAGACCATAGAGGGTATTTTGACGTTGTTTGGGACGATCCAGGAAAATCTGGAAAGTTCGACAGAATTAGTGGGACTAATTTCTCGGTCATAGTAGCAAACGAGAGCATAGTGGAGGTTTCATTTTTAAGAACATGGCAAACTTCAATGAAAGGCTCATGTGTCCCCATAAACATAGACCAAAGGTATATAATGCGAAGAGGTGAATCTGGGTTTTATTCATATGTAATATTTGACAGACCACAAGGATTACCTGCAGTGGAGGTTTATCAAATTAGAAATGTTTACAAACTCGCGGTTAACAGGTTTTCCTATATGGCTATATCCGATACTAGGCAAAGGAACATGCCATCTCTTACAGATAGAAAACAGGGTAGAACCTTGGCGTACCCTGAAGCTGTTCTCTTAACCAATCCAAACGACTCAAAATTTAAGGGAGAGGTGGATGACAAATACCAATACTCTAGTGAGATCAAAGATGACCGTGTTCATGGCTGGATTACCCAAGATCATTTTGCACCTGAGGGTTTCTGGATCATAACGCCCAGTAACGAGTTCCGCAGTGCTGGGCCTGTTAAACAAGACCTCACCTGTCATGTTGGCCCAACTGTTCTTTCCATGTACACGAGCACTCACTATGGTGGCAAGGATGTAACCATGACATTTAAAGAAGGGGAGACTCATAAAAAGGTTTTTGGCCCAATTTTTGTTTACCTTAACTCTGCTTCACTCAAAGAACAGTTTCGGACTCTATGGCCAGATGCTGTGAGACAGTCATCCAATGAAGTCGAAAAATGGCCTTACGATTTCGTTGGATCAAAAGATTTCATTCCACCCAATCAACGGGGAACAGTGGCAGGACTGTTACAAATTCAAGACGGAGGAGGGAAAGCTCAACCTGCTAGCAATGCTTCTGTTGGTCTAGCTTTGCCTGGTAAAGCAGGATCATGGCAGAAAGAGTGCAAGGGTTATCAATTCTGGAATCAAACTGACAAAAACGGAAACTTCTTAATTAAAAATATAGTACCTGGGGATTACAACTTGTATGCATGGGTTCCTGGTTTTATTGGAGATTACATGTATACAACCAAAATTACCATCAAGCCAGGAGGCAACATCAACTTGGGCTCACTTGTATATAATCCACCAAGAAATGGTCCTACTCTATGGGAAATTGGGATCCCAGATCGCTCAGCTGCAGAATTCTATATACCAGACCCTAATCCCGAGCTCATTAACAGATTATATTCTAACAATGGCACAGACAAGTTTAGGCAATACGGCTTGTGGGAGCGTTACACTGAGTTATATCCAAAACAAGATCTCGTTTACACGGTTGGTGTTTCTAATTATCACAAGGATTGGTTTTACGCTCAAGTTACCAGGAATGTAAATAAGACATATGTGCCAACCACATGGCAGATTAAATTCCCACTTCAAAATATCATAATGGGAGGAAACTACACACTACAAGTAGCCCTAGCATCCGCCACTTATTCTAGAGTGGAGGTTAGGTTTAATGACCCGAATGTAAAGCTTCCTCACTTCTCAACAGGGCCTATTGGCGATGACAATGCCATAGCAAGACACGGAATCCATGGATTGTATAGGCTATATACAATAGTTGTAGGTAGCAATCATTTGGTTAAAGGAAACAACACCATTTATTTGACACGGTCAAAAGCCACAAGTTTCTTCGAAGGAGTTATGTATGATTATATCCGTTTAGAAAGTCCTCCAACTAAAGCTACTTGA 2022 0.4021 MKVASQKQVSFKWFGMAVQFSIIILSACSERSFRRVSTPPLPPPVKLNTQDSHEVVITNDYVSLNVAKPEGYITGIFTGINNVLDTGIHTDHRGYFDVVWDDPGKSGKFDRISGTNFSVIVANESIVEVSFLRTWQTSMKGSCVPINIDQRYIMRRGESGFYSYVIFDRPQGLPAVEVYQIRNVYKLAVNRFSYMAISDTRQRNMPSLTDRKQGRTLAYPEAVLLTNPNDSKFKGEVDDKYQYSSEIKDDRVHGWITQDHFAPEGFWIITPSNEFRSAGPVKQDLTCHVGPTVLSMYTSTHYGGKDVTMTFKEGETHKKVFGPIFVYLNSASLKEQFRTLWPDAVRQSSNEVEKWPYDFVGSKDFIPPNQRGTVAGLLQIQDGGGKAQPASNASVGLALPGKAGSWQKECKGYQFWNQTDKNGNFLIKNIVPGDYNLYAWVPGFIGDYMYTTKITIKPGGNINLGSLVYNPPRNGPTLWEIGIPDRSAAEFYIPDPNPELINRLYSNNGTDKFRQYGLWERYTELYPKQDLVYTVGVSNYHKDWFYAQVTRNVNKTYVPTTWQIKFPLQNIIMGGNYTLQVALASATYSRVEVRFNDPNVKLPHFSTGPIGDDNAIARHGIHGLYRLYTIVVGSNHLVKGNNTIYLTRSKATSFFEGVMYDYIRLESPPTKAT 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00920 673 Gene3D - 48 345 IPR014718 GO:0030246
Cca06g00920 673 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
Cca06g00920 673 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 49 670 - -
Cca06g00920 673 Pfam Rhamnogalacturonate lyase family 44 237 IPR010325 -
Cca06g00920 673 SUPERFAMILY Galactose mutarotase-like 49 333 IPR011013 GO:0003824|GO:0005975|GO:0030246
Cca06g00920 673 Pfam Polysaccharide lyase family 4, domain II 391 463 IPR029413 -
Cca06g00920 673 Gene3D - 475 666 - -
Cca06g00920 673 SUPERFAMILY Galactose-binding domain-like 474 666 IPR008979 -
Cca06g00920 673 Gene3D - 366 465 - -
Cca06g00920 673 CDD RGL4_M 370 467 IPR029413 -
Cca06g00920 673 SUPERFAMILY Starch-binding domain-like 366 465 IPR013784 GO:0030246
Cca06g00920 673 Pfam Polysaccharide lyase family 4, domain III 477 665 IPR029411 -
Cca06g00920 673 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 49 670 - -
Cca06g00920 673 CDD RGL4_N 48 332 - -
Cca06g00920 673 CDD RGL4_C 479 666 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00920 Cca-Chr6 22786384 22796545 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00920 45 668 Polysaccharide Lyase AT1G09890 54.430 0.0 673
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00920 K18195 - gmx:100781089 1018.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00920 06 22786384 22796545 Cca11g00772 11 14333769 14341117 PCT