Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00919 ATGCTCGGTGCCTGTTCTAGAAAGCTTTCGACGACTCCTCCTCCTCCAGTCAAGCTGAATACCGAAATTCCTCAGCAGGTAGTGATTGGCAACGGCATCGTTTCCCTCAAGTTGTCAAATCCCGAGGGCCATATCATTCAATCATATACAGGAATTCACAGTGTATTTGATGAGAAAAATGCAGAAAATGATAGAGGGTATATACACATCACTCACTTCTTCACAAATTTACGATTGAAACTGTTTTGCAGAATCCAGGGGACAAATTTCTCAGTCATAGTAGCTAACGACAGTATAGTGGAGGTTTCATTTTTGAAAAAATGGACAGCTTCCCTGAAAGGCTCAAGTGTTCCCATAAACATAGACCAAAGGTATATTTTGCGAAGAGGCGATTCTGGGTTTTATTCATACATAATATTTAATCGACCACCTGGATTTCCTGAAGTGGTGATTGACCAAATTAGGATTGTTTACAAACTCGACGACAGCAGGTTCCACTACATGGCCATATCCGATACTAGGCAGAGGGACATGCCAACTGCGGGAGATAGAGCAAAGAGTCAACCACTGGCGTATAAGGAAGCTGTTCTCATAACCCATCCATCCAAGGCAGAATTTAAGGATGAGGTGGATGACAAATATCAGTACTCGTGTGAGAACAAAGATAACAAGGTTCATGGCTGGATTTCTAGTGATCCAACACCCGTTGGTTTTTGGTTGATAACGCCCAGTGATGAGTTCCGCCATGCTGGGCCCGTTAAGCAAGACCTCACTTCTCATGTTGGCCCAATTACTCTTTCCATGTTTGTGAGCACTCATTATGTTGGCAAGGATGTAGAAATAGGATTTGCTGAGGGGGAGACATATAAGAAAGTTTTCGGCCCAGTTTTTATTTACCTTAACACTGTTTCGGACCAAAAACAGTTTCGGTCTCTATGGTCAGATGCTGTAGAACAGTTATCCAATGAAGTTAGAAGATGGCCTTATGATTTCGTTGGATCAAATGATTTCATTCCACCCAATCAACGGGGAACAGTGGCTGGAGTGTTACACGTCCAAGATGGAGGGAAAGCTCAACCTGCTAGCAATGCTTACGTTGGTCTAGCTTTGCCTGGATTTGTTGGATCATGGCAAACAGAAAGCAAGGGTTATCAATTCTGGACTCAAGCTGACAAAGAGGGTCACTTCTTAATTAAAAATATTGTACCTGGGGATTACAACTTGTATGCATGGGTTCCTGGTTTCATTGGAGATTATAAATATGCAACAAAAATTACCATCAAACCAGGGGGCAACATCAACTTGAATTCAATCGTTTATAATCCTCCAAGAAATGGTCCTACTCTATGGGAAATTGGGATTCCAGACCGCTCAGCTGCAGAATTCTTGATACCAGACCCTGAACCCGGGCTCAGGAACAGATTATATTCCAGTAATAGCCCAGACAAGTTTAGGCAATACGGCTTGTGGGATCGTTACACCAAGTTATTTTCAACCCATGATCTCGTTTACACTGTTGGTGTTGATGACTATCACACGAAATGGTTTTTTGCTCATGTCAACAGGTATGTTTTGAAAATTTTGTACAATTTTTTTTTTTTTTTTATAATTGTGGAGCATGGTTGGTTTTGTCATCTAAACTGCACCAATGAATGCAGGAACAATAATAACACATACGTGCCAACCACATGGCAGATTCAATTCCACCTTCAAAATATCATTCCAGGAGGAAAGTACACACTACAACTGGCCCTGGCATCTGCCAATGATGCTAGAGTGCTGGTTAGGTTCAATGACCCGAATAGGTTTCCTGACTTCTCAACGGGGCTTATAGGAGGTGACAATGCCATAGCAAGACACGGAATCCATGGATTGTATAGGCTATTTACTATTGTTGTAGGTAGTAATCAATTGGTACAAGGAAAGAACGTCATCTATTTGACACAGTCAAAAGACGCAGGTCCTTTCGCAGGAGCAATGTATGATTATATCCGCTTAGAAAGTCCTCCAACTAAAGCTACTTGA 2025 0.4183 MLGACSRKLSTTPPPPVKLNTEIPQQVVIGNGIVSLKLSNPEGHIIQSYTGIHSVFDEKNAENDRGYIHITHFFTNLRLKLFCRIQGTNFSVIVANDSIVEVSFLKKWTASLKGSSVPINIDQRYILRRGDSGFYSYIIFNRPPGFPEVVIDQIRIVYKLDDSRFHYMAISDTRQRDMPTAGDRAKSQPLAYKEAVLITHPSKAEFKDEVDDKYQYSCENKDNKVHGWISSDPTPVGFWLITPSDEFRHAGPVKQDLTSHVGPITLSMFVSTHYVGKDVEIGFAEGETYKKVFGPVFIYLNTVSDQKQFRSLWSDAVEQLSNEVRRWPYDFVGSNDFIPPNQRGTVAGVLHVQDGGKAQPASNAYVGLALPGFVGSWQTESKGYQFWTQADKEGHFLIKNIVPGDYNLYAWVPGFIGDYKYATKITIKPGGNINLNSIVYNPPRNGPTLWEIGIPDRSAAEFLIPDPEPGLRNRLYSSNSPDKFRQYGLWDRYTKLFSTHDLVYTVGVDDYHTKWFFAHVNRYVLKILYNFFFFFIIVEHGWFCHLNCTNECRNNNNTYVPTTWQIQFHLQNIIPGGKYTLQLALASANDARVLVRFNDPNRFPDFSTGLIGGDNAIARHGIHGLYRLFTIVVGSNQLVQGKNVIYLTQSKDAGPFAGAMYDYIRLESPPTKAT 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00919 674 SUPERFAMILY Galactose mutarotase-like 114 303 IPR011013 GO:0003824|GO:0005975|GO:0030246
Cca06g00919 674 Gene3D - 338 438 - -
Cca06g00919 674 CDD RGL4_M 342 438 IPR029413 -
Cca06g00919 674 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 22 525 - -
Cca06g00919 674 SUPERFAMILY Starch-binding domain-like 338 438 IPR013784 GO:0030246
Cca06g00919 674 Pfam Polysaccharide lyase family 4, domain II 362 434 IPR029413 -
Cca06g00919 674 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 553 671 - -
Cca06g00919 674 CDD RGL4_C 450 667 - -
Cca06g00919 674 Pfam Polysaccharide lyase family 4, domain III 448 666 IPR029411 -
Cca06g00919 674 SUPERFAMILY Galactose-binding domain-like 445 667 IPR008979 -
Cca06g00919 674 CDD RGL4_N 26 308 - -
Cca06g00919 674 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 553 671 - -
Cca06g00919 674 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 22 525 - -
Cca06g00919 674 Gene3D - 554 667 - -
Cca06g00919 674 Gene3D - 32 310 IPR014718 GO:0030246
Cca06g00919 674 Pfam Rhamnogalacturonate lyase family 15 210 IPR010325 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00919 Cca-Chr6 22760854 22766948 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00919 25 669 Polysaccharide Lyase AT4G38030 51.534 0.0 649
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00919 K18195 - gmx:100801633 958.362