Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00916 ATGTCGAACGTGTTAGCAAGAGAAGAAAACGAAAAAGTTGCTACCATTGGCTGGGCAGCTAGAGATGCTTCGGGAATTCTCTCCCCATTTCACTTTACCAGAAGGGAAAATGGTGACAATGATATCACCCTTCATATATTATATTCTGGGATTTGCCACACGGATCTCCACAATGTGAAGAACGACTTTGGAATTTCCATCTATCCAATGGTTCCTGGGCATGAGATTGTGGGTAAAGTGACAAAGGTGGGTAGCAGAGTCACAAAATTCAGTGTTGGTGACATAGCGGGCGTGGGTGGTATTGTAGGTTCGTGTGGTTCATGTTCCGATTGCAGCAAAGGCTTCTATGTTTATTGTCCAAAAATGATATTAACCTACAGTGCACACTACCATGATGGAACAATAACCCAAGGTGGGTACTCGGATAAGCTAGTAGTTGACCAGAACTTTGCTGTGCTGATCCCAAAATCTCTGCCACTTGATGGGGCAGCCCCGTTGCTATGTGCTGGAATCACAGTATACAGTCCAATGAAGTATTTTGGGCTTGCTCAGCCTGGACTGCACTTGGGTGTGGTGGGCTTGGGAGGCCTCGGTCATGTGGCTGTCAAATTTGCTAAGGCTTTTGGTATGCATGTCACTGTGATAAGTACATCTCCCAGCAAGAAGGTAGAGGCATTGGGAAGTCTTGGTGCTGATGCTTTCTTGCTTAGTCAAGACCCACAACAGTTACAGGATGCCATGGGCACAATGGATGGCATTATTGACACAGTTTCAGCTAATCACTCAATCCAATCACTTATTGGTTTATTGAAAACACATGGAAAATTGATTTTGGTGGGTGCACCAGCTTTGTCTCTTGAGGTGTTAGCTATGCCTTTGCTTTTGGGGAGAAAGACGATTGCTGGCAGTGCAGGAGGTGGGAGTGAAGAGATGCAAGAGATGATGGATTTTGCAGCAAAGCATAATATTACAGCAGATGTGGAAGTCATTCCTATGGACTACGTCAACACTGCCTTTGAGAGGTTGAAAAACAATGATGTTAAATATCGATTTGTCATTGATGTGGCAAACACAATAAACTGCAACTCCAATTAG 1095 0.4429 MSNVLAREENEKVATIGWAARDASGILSPFHFTRRENGDNDITLHILYSGICHTDLHNVKNDFGISIYPMVPGHEIVGKVTKVGSRVTKFSVGDIAGVGGIVGSCGSCSDCSKGFYVYCPKMILTYSAHYHDGTITQGGYSDKLVVDQNFAVLIPKSLPLDGAAPLLCAGITVYSPMKYFGLAQPGLHLGVVGLGGLGHVAVKFAKAFGMHVTVISTSPSKKVEALGSLGADAFLLSQDPQQLQDAMGTMDGIIDTVSANHSIQSLIGLLKTHGKLILVGAPALSLEVLAMPLLLGRKTIAGSAGGGSEEMQEMMDFAAKHNITADVEVIPMDYVNTAFERLKNNDVKYRFVIDVANTINCNSN 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00916 364 Gene3D - 169 325 - -
Cca06g00916 364 Gene3D - 18 355 - -
Cca06g00916 364 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE-LIKE PROTEIN 1 360 - -
Cca06g00916 364 Pfam Alcohol dehydrogenase GroES-like domain 40 152 IPR013154 -
Cca06g00916 364 SUPERFAMILY GroES-like 22 186 IPR011032 -
Cca06g00916 364 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 158 323 IPR036291 -
Cca06g00916 364 SMART PKS_ER_names_mod 25 353 IPR020843 GO:0016491
Cca06g00916 364 PANTHER ALDEHYDE REDUCTASE 1 360 - -
Cca06g00916 364 CDD CAD1 17 354 - -
Cca06g00916 364 Pfam Zinc-binding dehydrogenase 196 319 IPR013149 -
Cca06g00916 364 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 73 87 IPR002328 GO:0008270|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00916 Cca-Chr6 22713224 22715091 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00916 1 364 Monolignol Biosynthesis Gene Families AT4G37990 62.637 4.32e-154 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00916 - K23232 gmx:100801089 600.512