Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00914 ATGTCGAACGTGTTAGCAAGAGAAGAAAACGAAAAAGTTGCTACCTTTGGCTGGGCAGCTAGAGGTGCTTCGGGAATTCTCTCCCCCTTTCACTTTACCAGAAGGGAAAATGGTGACAATGATATCACCCTTCATATACTCTATTCTGGGATTTGCCACTCGGATCTCCACATGGTGAAGAACGACTTTGGATTGTCCATCTATCCAATGGTTCCTGGGCATGAGATTGTGGGTAAAGTGACAAAGGTGGGTAGCAGAGTCACAAAATTCAGTGTTGGTGACATAGCGGGTGTGAGTGGCATTGTAGGTTCGTGTGGTTCATGTTCCGATTGCAGCAAGGGCTTCTATGTTTATTGTCCAAAAATGATATTAACCTACAGTGCACACTACCATGATGGAACAATAACCCAAGGTGGGTACTCGGATAAGATAGTAGTTGACCAGAACTTTGCGGTGCAAATCCCAAAATCTCTGCCACTTGATGGCGCAGCGCCGTTGCTATGTGCAGGAATTACAGTATACAGCTCAATGAAGTATTTTGGGCTTGCTAAGCCTGGACTGCACTTGGGTGTGGTAGGCCTGGGAGGCCTTGGTCATGTGGCTGTCAAATTTGCTAAAGCTTTTGGTATGCATGTCACTGTGATAAGTACATCTCCCAGCAAGAAGGTAGAGGCATTGGGAAGTCTTGGTGCTGATGCTTTCTTGGTTAGTCAAGACTCACAACAGTTGCAGGATGCCATGAGCACAATGGATGGTATTATTGACACAGTTTCAGCTAATCACTCAATCCAATCACTTATTGGTTTATTGAAAACACATGGAAAATTGATTTTGGTGGGTGCATCAACCTTGCCTCTTGAGGTGTTAGCTATGCCTTTACTTTTGGGTGA 890 0.4483 MSNVLAREENEKVATFGWAARGASGILSPFHFTRRENGDNDITLHILYSGICHSDLHMVKNDFGLSIYPMVPGHEIVGKVTKVGSRVTKFSVGDIAGVSGIVGSCGSCSDCSKGFYVYCPKMILTYSAHYHDGTITQGGYSDKIVVDQNFAVQIPKSLPLDGAAPLLCAGITVYSSMKYFGLAKPGLHLGVVGLGGLGHVAVKFAKAFGMHVTVISTSPSKKVEALGSLGADAFLVSQDSQQLQDAMSTMDGIIDTVSANHSIQSLIGLLKTHGKLILVGASTLPLEVLAMPLLLG 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00914 296 SMART PKS_ER_names_mod 25 278 IPR020843 GO:0016491
Cca06g00914 296 Pfam Alcohol dehydrogenase GroES-like domain 40 153 IPR013154 -
Cca06g00914 296 PANTHER ALDEHYDE REDUCTASE 1 296 - -
Cca06g00914 296 Pfam Zinc-binding dehydrogenase 196 287 IPR013149 -
Cca06g00914 296 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 158 294 IPR036291 -
Cca06g00914 296 SUPERFAMILY GroES-like 21 186 IPR011032 -
Cca06g00914 296 Gene3D - 169 295 - -
Cca06g00914 296 CDD CAD1 16 296 - -
Cca06g00914 296 Gene3D - 18 168 - -
Cca06g00914 296 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE-LIKE PROTEIN 1 296 - -
Cca06g00914 296 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 73 87 IPR002328 GO:0008270|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00914 Cca-Chr6 22695983 22700117 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00914 1 295 Monolignol Biosynthesis Gene Families AT4G37990 62.373 5.23e-119 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00914 - K23232 gmx:100801089 456.062