Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00910 ATGTCACCCGATGAGACACCACCTTCAAAGCCCGCCACAACAAAGGACCACGAGACTCAAGGTTCTGGTGGGAGGAAAAGCTCCTCCACAAGGCCTCAAGAGCAAGGTCTGAAGTGTCCACGTTGTGACTCACCCAACACCAAATTCTGCTACTACAACAACTACAGCCTCACGCAGCCTAGGCACTTCTGCAAGACGTGTAGAAGATACTGGACAAAAGGAGGTGCTTTGCGTAACGTCCCTATTGGTGGTGGATGCAGGAAGAACAAGAAGGTGAAGTCATCAAGGCTCTCATGTGACTCCAAGGACTCTGGTTCCTCCTCTTCAGACCTAGGTGGCCTCAAGTTCCTTCACACTCTCTCTCCCTCCATGGACTTTCACCTTGGTGGCTTACCCTTCCCTAGGCTGCACCATCACCCTCCAACTCCAACTCCAACCACTTATAACCATTTCTCTTCTTTTGGTGACACTTCTAGTGCCTCTTCATGTTTCAACCTTGACCCTTCTCCTGGCACCTCAAATTCTTTGGCTGCAATGAACTACCCCTTTTCTTACAATGGTGCAGTCCAAGGCATGAGCTCTATGAACGTTCACAGTCACACTAGCCTTGCTTCCTCCATCGAGTCTTTGAGTTCCATAAACCAGGACTTGCACTGGAAGCTGCAGCAGCAGCGTTTGGCAATGCTGTTTGGAGGAGATAGCAGCCAGAAAGATAGCGTTAATAACCAGGTTGAGAACCAGACACAGAAGCCCCAACCCATTATGTTTCAGAATCTTGAGATTTCAAAGCCAGGCATTAATTTCCAAGTTGGGAACTCAAGAAAAGAACAAGGTCCAAGTGGGGACACGCCATCAACCGAGTGGTTCTTTGGGAATTCTTATGCCTCGGTGGctcctacagctactactactactacAAACAGTAGCGGTGGCCCAGGGAATGATAATGTGAGCAATTGGGGTAGCGGTGTTCATGCTTGGGGTGATGTGCCGCAGCAATATAGCGCTTTGCCCTAG 1017 0.4828 MSPDETPPSKPATTKDHETQGSGGRKSSSTRPQEQGLKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKVKSSRLSCDSKDSGSSSSDLGGLKFLHTLSPSMDFHLGGLPFPRLHHHPPTPTPTTYNHFSSFGDTSSASSCFNLDPSPGTSNSLAAMNYPFSYNGAVQGMSSMNVHSHTSLASSIESLSSINQDLHWKLQQQRLAMLFGGDSSQKDSVNNQVENQTQKPQPIMFQNLEISKPGINFQVGNSRKEQGPSGDTPSTEWFFGNSYASVAPTATTTTTNSSGGPGNDNVSNWGSGVHAWGDVPQQYSALP 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00910 338 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN-RELATED 9 338 - -
Cca06g00910 338 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 9 338 IPR045174 GO:0003700|GO:0006355
Cca06g00910 338 MobiDBLite consensus disorder prediction 300 338 - -
Cca06g00910 338 ProSiteProfiles Zinc finger Dof-type profile. 37 91 IPR003851 GO:0003677|GO:0006355
Cca06g00910 338 ProSitePatterns Zinc finger Dof-type signature. 39 75 IPR003851 GO:0003677|GO:0006355
Cca06g00910 338 MobiDBLite consensus disorder prediction 1 39 - -
Cca06g00910 338 Pfam Dof domain, zinc finger 35 91 IPR003851 GO:0003677|GO:0006355
Cca06g00910 338 MobiDBLite consensus disorder prediction 7 35 - -
Cca06g00910 338 MobiDBLite consensus disorder prediction 300 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00910 Cca-Chr6 22630010 22631712 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00910 7 338 C2C2-Dof Transcription Factor Family AT5G65590 40.176 4.82e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Cca06g00910 zf-Dof 1.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00910 - - gmx:100780729 503.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00910 06 22630010 22631712 Cca11g00768 11 14209004 14210056 PCT