Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00899 ATGGCATCAACTTTTGATCACGCTAAAGAGATTCCCAGCAGCGACGACGATGCATCGCCGAGGACGATTCTGGAAACCCCTGTTTCGGGAACAGAGTCCGACAATAGCGGCAGCGGCAGCGGCAGCttcggtttcggtttcggtttcggttCGCCGGATAAATCGCAGTCGGTGATCGGAAAAGCGATTCCCTGGGAAAGCATGCAGCAGTGGAAGTCTATGATCGACGTTTTCAAGTTCAAGAATGTGCGAAAGTTATCGGCCTTTCCTCTGCTCGCTGTGACCAATGACATCTCTCGAAAGGGCTTCAACAAAAAACTCGCTCGTATTCGAAGTGCTGAAGAGGGTATTGATATTGGGGCTATTCCCACCAAACCCTCTTGGAGGAACTTCGATTACGAAGAACTTGCAACTGCTACTGGTGATTTTTGCACTGAGAACATGATTGGGAAAGGTGGTCATGCTGAAGTGTACAAAGGCCAATTACCCGATGGTCAAGTTATAGCTGTAAAGAGGATAATGAAGAATGAAAAGGATGCTGCAGATAGAGCAGGTGATTTCTTGACAGAGCTTGGTATTATTGCACACATAAGCCACCAAAATGCTACACGTCTTGTCGGCTTTGGAATTGATCGTGGCCTCTACTTTGTTCTACAATATGCTCCACATGGCAGTCTTTCTTCTTTGCTTTTTGGTGCCAAAGGCTTGGAGTGGAAGATAAGATACAAGGTAGCTATTGGAGTGGCAGAGGGACTGCATTATCTCCATAAAGAGTGCCCAAGACGAATCATTCATAGGGATATCAAGGCTTCCAACATACTGCTTAACAAAGATTATGAAGCTGAGATTTCAGATTTTGGACTTGCAAAGTGGCTCCCAAGTAAGTGGGCCAACCACGTTGTCTTCCCAATAGAAGGCACATTTGGATATTTGGCTCCAGAGTACTTCATGCATGGAATTGTGGATGAGAAAACTGATGTATTTGCCTTTGGAGTTTTGCTGCTGGAGCTCATAACAGGTCGCCGTGCTGTGGATGATGCTATAGGGAAAGTCTTGTCATCTGGGCCAAGCCACTGCTGGACGCAAACAATGTGA 1095 0.453 MASTFDHAKEIPSSDDDASPRTILETPVSGTESDNSGSGSGSFGFGFGFGSPDKSQSVIGKAIPWESMQQWKSMIDVFKFKNVRKLSAFPLLAVTNDISRKGFNKKLARIRSAEEGIDIGAIPTKPSWRNFDYEELATATGDFCTENMIGKGGHAEVYKGQLPDGQVIAVKRIMKNEKDAADRAGDFLTELGIIAHISHQNATRLVGFGIDRGLYFVLQYAPHGSLSSLLFGAKGLEWKIRYKVAIGVAEGLHYLHKECPRRIIHRDIKASNILLNKDYEAEISDFGLAKWLPSKWANHVVFPIEGTFGYLAPEYFMHGIVDEKTDVFAFGVLLLELITGRRAVDDAIGKVLSSGPSHCWTQTM 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00899 364 Pfam Protein kinase domain 146 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00899 364 ProSiteProfiles Protein kinase domain profile. 143 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00899 364 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-KINASE 9 347 - -
Cca06g00899 364 ProSitePatterns Protein kinases ATP-binding region signature. 149 175 IPR017441 GO:0005524
Cca06g00899 364 MobiDBLite consensus disorder prediction 1 38 - -
Cca06g00899 364 MobiDBLite consensus disorder prediction 24 38 - -
Cca06g00899 364 Gene3D Phosphorylase Kinase; domain 1 120 220 - -
Cca06g00899 364 SMART serkin_6 143 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00899 364 PANTHER OS08G0249100 PROTEIN 9 347 - -
Cca06g00899 364 SUPERFAMILY Protein kinase-like (PK-like) 128 346 IPR011009 -
Cca06g00899 364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 263 275 IPR008271 GO:0004672|GO:0006468
Cca06g00899 364 Gene3D Transferase(Phosphotransferase) domain 1 222 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00899 Cca-Chr6 22491474 22495653 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00899 131 345 Trihelix Transcription Factor Family AT1G26150 48.165 6.11e-57 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Cca06g00899 Pkinase 1.8e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00899 - - gmx:100818314 533.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00899 06 22491474 22495653 Cca11g00759 11 13844439 13848727 PCT