Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00897 ATGGCACGTGCGACTAACTGGCTTTCGTTCTCGCTTTCCCCCATGGAAATGCTCCGAACCTCCGAGCCTCAGTTCGCTCAATACGACGCCGCTTCCGCCACTTCCTCTCATCACTACTACCTCGACAACTTGTACAACAACGCTGCAGGGTGGGGAAACGGGAACCTCAAGTCCCAGGTGCTGATGGAGCAGAATCTGAACCAGAGCGAGGTCAGCTTCGTGGACTCGTCGACGCACTCGCGGGGCGTGAGCCACGCGCCGCCGCCCAAGCTCGAGGACTTTCTCGGCAGCGACTCCTCCGCCGTGATGCGCTACTCCGACAGCCAGACCGAGACGCAGGACTCCTCGTTGACTCACATGTACGACCACCACGGTTCCGCCGCGTACTTCGGCGACCACCAGGATCTCAAGGCCATTGCTGGATTCCAGGCGTTCTCCACCAACTCTGGTTCCGAGGTTGATGACTCGGCCTCCATCGGGAAAGCGCAACCCAGCGAGTTCGGGACTCACTCTATTGAATCCTCGGTGAACGAGTTCAACGCGTTTTCCGCCGCCTCCGGCGGCTGCGGCGGTGCTTCCGGAACTCTGTCGCTCGCTGTGGCGCAGAGCACCGAGAAGGCCGTCGTGGCGGCGGATTCCGATAGCTCGAAGAAGGTCGTGGAAACCTTCGGCCAGCGGACTTCTATTTACAGAGGCGTCACTAGGCACCGATGGACAGGTAGATATGAAGCGCATCTATGGGACAACAGTTGCAGAAGGGAGGGTCAAGCCAGGAAAGGGCGTCAAGTTTATTTGGGTGGATATGATAAGGAAGACAAGGCCGCGAGAGCTTATGATTTGGCAGCTCTAAAGTACTGGGGTCCCACCGCTACCACCAACTTTCCTGTTTCCAATTATTCAAAGGAAGTGGAGGAGATGAAACATGTAACAAAGCAAGAATTTATTGCATCATTGAGAAGGAAAAGTAGTGGTTTTTCCAGGGGAGCTTCCATATACAGAGGTGTTACAAGGCATCATCAACAGGGTAGGTGGCAAGCAAGAATTGGCCGCGTAGCTGGAAACAAAGATCTGTACTTAGGAACATTCGCGACTGAAGAGGAAGCAGCAGAGGCGTACGATATTGCAGCAATAAAGTTCAGAGGTGCAAACGCAGTAACCAATTTTGAGATGAATAGATACGATGTGGAAGCTATAATGAAGAGTTCTCTTCCAGTTGGTGGGGCAGCAAAACGCTTGAAGCTTTCCCTTGAATCAGAGCAGAAAGTTGCTGTGAACAGCAATCAACAGAATCCACAATGTGTAAACGTGAGTGGCAACATCAATTTCTCGTCCATTCATCAGCCACTTGCCTCTATCCCTTGTGGAATTCCATTCGACTCTACAACAGCATATTATCATCACAACCTTTTCCAACATTTTCATCCCAACAACGCTGGCACAGCAGCTTCTGCGGTTACTTctgccaatgcaactgcaaccggactcactgcactgccaccaccatctgcagctgAGTTCTTTATTTGGCCTCACCAGTCTTATTGA 1545 0.5036 MARATNWLSFSLSPMEMLRTSEPQFAQYDAASATSSHHYYLDNLYNNAAGWGNGNLKSQVLMEQNLNQSEVSFVDSSTHSRGVSHAPPPKLEDFLGSDSSAVMRYSDSQTETQDSSLTHMYDHHGSAAYFGDHQDLKAIAGFQAFSTNSGSEVDDSASIGKAQPSEFGTHSIESSVNEFNAFSAASGGCGGASGTLSLAVAQSTEKAVVAADSDSSKKVVETFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEDKAARAYDLAALKYWGPTATTNFPVSNYSKEVEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGANAVTNFEMNRYDVEAIMKSSLPVGGAAKRLKLSLESEQKVAVNSNQQNPQCVNVSGNINFSSIHQPLASIPCGIPFDSTTAYYHHNLFQHFHPNNAGTAASAVTSANATATGLTALPPPSAAEFFIWPHQSY 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00897 514 SUPERFAMILY DNA-binding domain 228 297 IPR016177 GO:0003677
Cca06g00897 514 ProSiteProfiles AP2/ERF domain profile. 331 389 IPR001471 GO:0003700|GO:0006355
Cca06g00897 514 SUPERFAMILY DNA-binding domain 330 390 IPR016177 GO:0003677
Cca06g00897 514 SMART rav1_2 229 301 IPR001471 GO:0003700|GO:0006355
Cca06g00897 514 SMART rav1_2 331 395 IPR001471 GO:0003700|GO:0006355
Cca06g00897 514 Pfam AP2 domain 229 287 IPR001471 GO:0003700|GO:0006355
Cca06g00897 514 Pfam AP2 domain 331 381 IPR001471 GO:0003700|GO:0006355
Cca06g00897 514 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 511 - -
Cca06g00897 514 CDD AP2 330 389 IPR001471 GO:0003700|GO:0006355
Cca06g00897 514 CDD AP2 228 297 IPR001471 GO:0003700|GO:0006355
Cca06g00897 514 PRINTS Ethylene responsive element binding protein signature 230 241 IPR001471 GO:0003700|GO:0006355
Cca06g00897 514 PRINTS Ethylene responsive element binding protein signature 371 391 IPR001471 GO:0003700|GO:0006355
Cca06g00897 514 ProSiteProfiles AP2/ERF domain profile. 229 295 IPR001471 GO:0003700|GO:0006355
Cca06g00897 514 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 5 511 - -
Cca06g00897 514 Gene3D AP2/ERF domain 229 297 IPR036955 GO:0003700|GO:0006355
Cca06g00897 514 Gene3D AP2/ERF domain 331 391 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00897 Cca-Chr6 22480701 22486092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00897 71 514 AP2-EREBP Transcription Factor Family AT5G10510 58.462 8.61e-176 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Cca06g00897 AP2 6.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00897 K09285 - gmx:100777168 851.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00897 06 22480701 22486092 Cca11g00756 11 13769736 13774903 PCT