Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00896 ATGGATGCAATCCAAAGGCAGAAAATCTATGTTGCTGTTGGTAATGATGTGCAGGATGGATTCAAGACTTTGAATTGGGCTCTCAAGAAATGGAATTCTCATCCAATTTCCATTGTTATTCTCCATGTGACACATAATAGTCCAAATGATTATGTCCAAACACCATTTGGGAAACTTCCAGCAAGATCTGTGAGTGAAGAGAAGCTACAAATTCTAAGGAAAGATGAGCAAGAGAAAATCAACAAGCTGCTTTCTAAGTATGTTGCTTTCTGTGGCAAGGTGTCAGCAGAGATTGTTGAAGTTGAGAAATTTGATGAACCTATGCAAAAGCACATCATAGACTTGATCTTTGGTCTAGGAATAACAAAATTGGTCATGGGATTTTCATTCATGAAGCCCTCCATGAAATCAAAAGGTGCCATTAGTGGATTGTTCTATGTTCATCAGCACAAGCCTGGCTTCTGTGAATTGTTCATTATTTGTGGAGGGAAGCAAGTTTTCCTTAGAGGAAAAAATGATGAGAAAATCATGGAGGATGATCATGGGGTGATGGTTGGCAGAATGAGAGATAAGGTAACTTTCAAAGATTGGCTAGACAAATGGTTCAATGACAAAACCAACGATAGTAGAAGTGCATCACTTTCCTCATCCAATTTGGAGTCCCCTGTGAACGAAAACCAATGGGAATTTTACCTTCAGGAAATTGAAAATTATTATCAAGAATTGTTGTCTTCTAAGACAGAGGAAGGAAGCTGCGTGCTAGATAATGACGACTCACAGACTGGTCCAATTGAACCACATGTCACCGAAAACAACAATTCTAAGGTGAGTGCTGCGGAAAAAATTGAAATTCTGAAAAATAAGGTGAATGAAGCTCATGAGATAATCCAATTAAAGAAGAAAGAGGCCAAGGAAAGCATAGAGAGGCAGACAAAAGCTGAATGGGCAATTTGTTTATGCAACTGTAGGGCTGAAGAAGTGGAAAATCGAATACGGGAAGAGGTGAGTGCGAGGGAGGAGCTAAAGAAGGAAATGGAAGCGGAGAGAGAGCAAAGAGAGGAGATGAGAATAGAGGTGGAAGAGAGAAAGAGAAGGCTTAGTTCGCTGACGGAGGTGCAGTCGGAGCTGTCGGACAGGCTCCGCATATGGACGGCGGCGGAGACGCGGGCGGAGACGCAGCTGGAGAAGGCGGTGGGAGAGAGGAGAGAGATGGTGAGGGAAATAGACGAGTTGCGGAGGCAGAGGGATGTGTTGAACAGAAGGATCGAGTTCTGCAAGCACAAGGACGCCATCGGAATGGCCGCTAGACTCGCCGACACGTGCTGCATGTTCAGGGAGTACACGGAGGAGGAGCTCCGCTTGGCCACCGATAACTTCTCCGACCGCCTCAGGTTGAAGTCCGGTGGCGATTGGACCAATGTGTACAGAGGACGCTTCAACCACTCCACCGTTGCGATCAAGATGCTCCCTTCTGTTTCCCTCCAACAGTTACAATCCAAGGTAAGGCTTCTTGGTGACATTAGGCAACCTCATCTGGTTGCCATGGTGGGCTTTTGCTCTGAGCCCAAATGCGTAGTTTTGGAATACATGCGCAACGGGAGCTTGCGCGATATGCTCTTTTCTAGGAGAAAAAACCGGGCCATACGATGGCACGACCGAATACGAATAGCCGCAGAAGTTTGTTCGGGCCTGGGCTTTCTCAATAGAGCCGAGCCGAGGCCTGTTATTCATTGTCACTTGACCCCATCCAACATCCTCCTAGACCGCAATTTGGTTGCAAAAATCACGGGCTTTGGGCTTCATGAATGCCATGATGAGCAGTGTAACGTCGAGTCAGATTTGCGGGCCATAGCGGTTTTATTAATGCATCTTCTGACGGGAAGAAATTGGACCGGGCTCGTTGAGGAAGTGATGACAGTGGATATGGATGGGGAGGCATTGGCTAGTGTTCTTGATGAGATGGCTGGACAATGGCCATTGGATCTGGCAAAGGAACTTGCGGGCCTAGCTATGAGGTGCATGTCAATCAAAAGCAAGCCCAACTTAGAACTAAGCATTGCAACGGTCTTAGAGGAACTCAATGAGATAAGAAAAAAGGGAGATGAAATAATTGGAAGGGAAGGGCGAAAGGCAATCATTGGTGGATGTATAGATAGAGAGTGTTCCAATGATGTGCCTAGTGTTTTCCTTTGCCCCATACTTCAGGAGGTAATGAAAAATCCACACGTGGCAGCAGATGGATTTTCTTATGAGCTGGAAGCAATAGAACATTGGCTGCAATCAGGGCGTGACACATCACCAATGACAAATTTGAGGCTGAAGCACACATTCCTCACACCTAATCACACTCTTCGTTCCCTAATTGTGGACTGGCAGACCAACAAATCACCTAGCGTTGCACATTGA 2406 0.458 MDAIQRQKIYVAVGNDVQDGFKTLNWALKKWNSHPISIVILHVTHNSPNDYVQTPFGKLPARSVSEEKLQILRKDEQEKINKLLSKYVAFCGKVSAEIVEVEKFDEPMQKHIIDLIFGLGITKLVMGFSFMKPSMKSKGAISGLFYVHQHKPGFCELFIICGGKQVFLRGKNDEKIMEDDHGVMVGRMRDKVTFKDWLDKWFNDKTNDSRSASLSSSNLESPVNENQWEFYLQEIENYYQELLSSKTEEGSCVLDNDDSQTGPIEPHVTENNNSKVSAAEKIEILKNKVNEAHEIIQLKKKEAKESIERQTKAEWAICLCNCRAEEVENRIREEVSAREELKKEMEAEREQREEMRIEVEERKRRLSSLTEVQSELSDRLRIWTAAETRAETQLEKAVGERREMVREIDELRRQRDVLNRRIEFCKHKDAIGMAARLADTCCMFREYTEEELRLATDNFSDRLRLKSGGDWTNVYRGRFNHSTVAIKMLPSVSLQQLQSKVRLLGDIRQPHLVAMVGFCSEPKCVVLEYMRNGSLRDMLFSRRKNRAIRWHDRIRIAAEVCSGLGFLNRAEPRPVIHCHLTPSNILLDRNLVAKITGFGLHECHDEQCNVESDLRAIAVLLMHLLTGRNWTGLVEEVMTVDMDGEALASVLDEMAGQWPLDLAKELAGLAMRCMSIKSKPNLELSIATVLEELNEIRKKGDEIIGREGRKAIIGGCIDRECSNDVPSVFLCPILQEVMKNPHVAADGFSYELEAIEHWLQSGRDTSPMTNLRLKHTFLTPNHTLRSLIVDWQTNKSPSVAH 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00896 801 CDD RING-Ubox_WDSUB1_like 729 770 - -
Cca06g00896 801 Coils Coil 324 372 - -
Cca06g00896 801 Gene3D Phosphorylase Kinase; domain 1 433 530 - -
Cca06g00896 801 Pfam U-box domain 725 795 IPR003613 GO:0004842|GO:0016567
Cca06g00896 801 SMART Ubox_2 728 791 IPR003613 GO:0004842|GO:0016567
Cca06g00896 801 SUPERFAMILY RING/U-box 722 794 - -
Cca06g00896 801 Pfam Protein tyrosine and serine/threonine kinase 469 607 IPR001245 GO:0004672|GO:0006468
Cca06g00896 801 Coils Coil 282 302 - -
Cca06g00896 801 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 723 799 IPR013083 -
Cca06g00896 801 Gene3D Transferase(Phosphotransferase) domain 1 531 705 - -
Cca06g00896 801 ProSiteProfiles Protein kinase domain profile. 460 713 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00896 801 PANTHER OS02G0152300 PROTEIN 6 794 - -
Cca06g00896 801 SUPERFAMILY Protein kinase-like (PK-like) 443 676 IPR011009 -
Cca06g00896 801 Coils Coil 66 86 - -
Cca06g00896 801 ProSiteProfiles U-box domain profile. 724 798 IPR003613 GO:0004842|GO:0016567
Cca06g00896 801 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 50-RELATED 6 794 - -
Cca06g00896 801 Coils Coil 394 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00896 Cca-Chr6 22420108 22424799 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00896 7 800 U-box Gene Family AT5G65500 50.062 0.0 764
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Cca06g00896 PK_Tyr_Ser-Thr 1.6e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00896 - - gmx:100786771 1372.84