Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00890 ATGGCTCTTCCTGGTTCCCTGCAGTTGTCCCATGGATTGGTACTTTGCAGGAACCTGGGCTGCAATAAAAATTCGAGGGCAACAGGACGTAGCAAGTTGCATTTATTTAGTACAGGTCCTTCATGTCCGATTTCGTTCATAAAACAGGAGTCCAGGTGTTTTCAACATCTTCGTCTTATAAACAGGCCAACACATACATTATCTTCCAAATCCCGCACTTTTAAGTGTCATTGTTTTTTAGTGCCAGGCCAACCCAATGAACTTCCTGCGGTTAAAGTGGTTGCTACAGTGTTGGCAAGGTCTTGTAATGTGTTACAAAATAGTCCCATAGTAGTAAAGTTGATTCCTCCAGTTGGCATTATCATTTTTGCAATATGGGGTGTTGGTCCATTATTGTTTCAGACAAGGAAATTATTTTTTCAGAGGAGTGATAATAGTTGGAAGAAAAGTACCACTCACTATATAGTAACTTCTTACCTTCGGCCATTATTGTTATGGACTGGAGCAATACTTATTTGCAGAGCATTGGAGCCATTAATTCTACCTTCAGAAAGTGGCCAGGTTGTTAAGGAACGGCTTTTGAATTTTGTAAGATCATTGTCAACAGTACTGGCCTTTGCCTATTGCCTGTCAAGTGTAATTCAACAAGCGCAGAAATTCTTAGCAGAGGGTACTGATGCAAGTGAGGCGAGAAATATGGGATTCCAATTTGCTGGCAAAGCTGTTTATTCAGCAGTATGGGTTGCTGCCTTTTCATTGTTCATGGAGTTGCTGGGCTTCTCTACCCAAAAATGGGTTACTGCAGGAGGTCTTGGGACAGTTTTGTTGACCCTCGCTGGCCGTGAGATATTTACAAACTTCCTTTCAAGTGTGATGATTCATGCAACTCGACCTTTTGTGGTTAATGAATGGATCCAAACAAAGATTGAAGGATATGAGGTTTCTGGTACTGTTGAGCATGTTGGCTGGTGGTCACCGACAATTATTAGAGGTGAAGATCGTGAAGCTGTTCACATTCCAAACCACAAATTTACAGTGAATGTCGTGCGGAACCTTAGTCAAAAAACACATTGGCGAATCAAAACCCATTTAGCCATTAGTCATTTGGATGTAAATAAGATTAATAACATTGTTGCTGACATGCGAAAAGTATTAGCCAAAAATCCTCAAGTTGAGCAGCAGAGGTTGCACAGGAGAGTGTTTTTGGACAACATAAATCCTGAAAATCAAGCTCTTTTGATTCTAGTGTCTTGTTTTGTTAAGACCTCACATTTTGAAGAGTATCTGTGTGTTAAGGAAGCTATACTGTTGGATCTTCTTAGAGTTATCGGCCATCACCGAGCACGACTTGCAACACCAGTCCGTACCCTGCAGAAAGTATACAGTGATGCTGACTTGGACAACATACCATTTGCAGATTCCACATTTGGTCGTGGTGCTGGAACAGTACCTAACCGTCCATTATTAGTGATTGAACCGTCGTACAAGATCAATGGAGATGATAAGATGAAAAAATCGGCAAAAGCAGCTGTTGATCAAGATAACAAGACAGCTACACGAACCAAACCTGACACCAAGACAGACACCATGGTTAGAGGAACTCAAGATGACACTGAGGTGGATCCCAAAGTTGTGACATCTATCTCCGATGCAAATGGAAACTCTAAGACTGTTGTGACACCTAAACCTGATCTTGAAGTGGGTGAAAACAAGCCACTGAAATCAGATTCAAACAAGGAAAGCATGGAGGTGCTAGAATCTTCTTCTAAATCCAAACTAACTGGTTTGGTAGTAGATAATTCGGGCCAGAAGGACATAGATGCCAAACAATCCAAGGGTCAGACCACTAGAAACATAAAGCCAAATATTGACCCTGACAATGTAGTGTCCTCAACTACCAACGGTGACAAAACTGGTGGACTTAATATGAATGTGCCAACAAAACAGCAAGGGGAAAAGAAACCTGCTGCACAGCCTCATGCATCCAGGCCTGTTCTTGAAGAGAATATAGTACTTGGTGTTGCATTGGAGGGATCAAAGAGGACACTTCCCATTGATGAGGAGATTGACAATGTAACACCAAGAGAAGCAAAAGAAATGGCTGCATTCCAGGGTGGAAATGGATCTCCAAAGACTCCAGATGGAAGTGACAAGTAG 2157 0.4182 MALPGSLQLSHGLVLCRNLGCNKNSRATGRSKLHLFSTGPSCPISFIKQESRCFQHLRLINRPTHTLSSKSRTFKCHCFLVPGQPNELPAVKVVATVLARSCNVLQNSPIVVKLIPPVGIIIFAIWGVGPLLFQTRKLFFQRSDNSWKKSTTHYIVTSYLRPLLLWTGAILICRALEPLILPSESGQVVKERLLNFVRSLSTVLAFAYCLSSVIQQAQKFLAEGTDASEARNMGFQFAGKAVYSAVWVAAFSLFMELLGFSTQKWVTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAVHIPNHKFTVNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHFEEYLCVKEAILLDLLRVIGHHRARLATPVRTLQKVYSDADLDNIPFADSTFGRGAGTVPNRPLLVIEPSYKINGDDKMKKSAKAAVDQDNKTATRTKPDTKTDTMVRGTQDDTEVDPKVVTSISDANGNSKTVVTPKPDLEVGENKPLKSDSNKESMEVLESSSKSKLTGLVVDNSGQKDIDAKQSKGQTTRNIKPNIDPDNVVSSTTNGDKTGGLNMNVPTKQQGEKKPAAQPHASRPVLEENIVLGVALEGSKRTLPIDEEIDNVTPREAKEMAAFQGGNGSPKTPDGSDK 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00890 718 SUPERFAMILY Sm-like ribonucleoproteins 283 353 IPR010920 -
Cca06g00890 718 Gene3D - 299 354 IPR023408 -
Cca06g00890 718 PANTHER MECHANOSENSITIVE ION CHANNEL-LIKE PROTEIN 1 718 - -
Cca06g00890 718 MobiDBLite consensus disorder prediction 685 718 - -
Cca06g00890 718 Pfam Mechanosensitive ion channel 240 446 IPR006685 GO:0016020|GO:0055085
Cca06g00890 718 Gene3D - 193 297 - -
Cca06g00890 718 MobiDBLite consensus disorder prediction 502 539 - -
Cca06g00890 718 MobiDBLite consensus disorder prediction 607 651 - -
Cca06g00890 718 MobiDBLite consensus disorder prediction 502 665 - -
Cca06g00890 718 MobiDBLite consensus disorder prediction 540 559 - -
Cca06g00890 718 MobiDBLite consensus disorder prediction 567 586 - -
Cca06g00890 718 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 718 IPR045042 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00890 Cca-Chr6 22358126 22367173 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00890 9 718 Mechanosensitive Ion Channel Family AT5G10490 55.817 0.0 733
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00890 K22047 - gmx:100789444 1251.11