Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00887 ATGGCCCCAAAGCGAACTCGTGCATCTCATGGGTCATCTTCTAATCCCACACCTGAGTTGGAAGACATGGAAGTACCCGTTATTCCGCCTCTACAATTCCGAGACAGTGAGCAACACGATAGGTATCAGACTCTTAGTACTCGTACAATAACTGCAACAAGGATATTGAAATTTGCAAGATTTGATAGGATTTACTGTTCTACAACGAAAATGTCTCGGATGTCTTCAAACTCATGCCCAATGAACTCCATGAATTCAAGTGGGTCTGAAGGTCATGGTAGCAGGTATTGTGTTCCCTATTGCTATTGTGGGGAGGTTGTTGTGTTGCGAACAACAATGACATTTGCAAATACTGGTAAAAGATTCTGGGGTTGTTCAAATTACAAGTCAACGACTCAGCTTTTTTCGGTTAAGGTCACGTTCTCCAAGCGTCGCAGAGGGCTCTTCAAGAAAGCTGAGGAGCTTTCGGTTCTGTGTGATGCTGATGTTGCTCTCATAATCTTCTCTTCCACTGGGAAGCTCTTTGAGTTCTCCAGCTCAAGCATGAAGGAAATACTTGAAAGGCATCATTTGCACTCAAAGAACCTAGCAAGGATGGAACAACCATCTCTCGAGTTGCAGCTAGTTGAAAACAGCAACTACACGAGATTGAGCAAGGAAGTTGCTGAGAAGAGCCATCAACTAAGGCAGCTGAGAGGAGAGGATCTTCAAGGTTTAAACATAGAAGAATTGCAACAACTGGAAAGCTCTCTTGAAACTGGATTGGGCCGTGTTATAGAAAAGAAGGGAGAGAGGATTATGAATGAGATCACTGATCTCCAAAGAAAGGGGATGGCATTGATGGAAGAGAACGAACGACTAAAACGTCATGTGGCGGGCATAATTAGTGGGCAAAGGGTTGGTGGTGCCGATTCTGAGAACTTTGTTATGGATGAAGGTCAGTCTTCGGAGTCTGTTACTTACGTCTGCAACTCCACCACCACCGGACCTCCTCAGGACTATGAAAGCTCAGATACATCACTCAAATTGGGGCTACCGTACTCCGGCTGA 1050 0.4486 MAPKRTRASHGSSSNPTPELEDMEVPVIPPLQFRDSEQHDRYQTLSTRTITATRILKFARFDRIYCSTTKMSRMSSNSCPMNSMNSSGSEGHGSRYCVPYCYCGEVVVLRTTMTFANTGKRFWGCSNYKSTTQLFSVKVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFSSSSMKEILERHHLHSKNLARMEQPSLELQLVENSNYTRLSKEVAEKSHQLRQLRGEDLQGLNIEELQQLESSLETGLGRVIEKKGERIMNEITDLQRKGMALMEENERLKRHVAGIISGQRVGGADSENFVMDEGQSSESVTYVCNSTTTGPPQDYESSDTSLKLGLPYSG 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00887 349 Coils Coil 270 290 - -
Cca06g00887 349 ProSiteProfiles MADS-box domain profile. 138 181 IPR002100 GO:0003677|GO:0046983
Cca06g00887 349 Coils Coil 214 234 - -
Cca06g00887 349 MobiDBLite consensus disorder prediction 327 349 - -
Cca06g00887 349 CDD MADS_MEF2_like 138 197 IPR033896 GO:0000977|GO:0045944
Cca06g00887 349 PANTHER MADS-BOX PROTEIN SVP ISOFORM X1 137 346 - -
Cca06g00887 349 PANTHER SERUM RESPONSE FACTOR HOMOLOG 137 346 - -
Cca06g00887 349 MobiDBLite consensus disorder prediction 1 23 - -
Cca06g00887 349 Gene3D - 139 213 IPR036879 GO:0003677|GO:0046983
Cca06g00887 349 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 138 177 IPR002100 GO:0003677|GO:0046983
Cca06g00887 349 SUPERFAMILY SRF-like 138 200 IPR036879 GO:0003677|GO:0046983
Cca06g00887 349 SMART madsneu2 118 180 IPR002100 GO:0003677|GO:0046983
Cca06g00887 349 Pfam K-box region 211 291 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca06g00887 349 ProSiteProfiles K-box domain profile. 207 297 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00887 Cca-Chr6 22303447 22318045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00887 138 349 MADS-box Gene Family AT2G22540 67.556 2.46e-99 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Cca06g00887 K-box 7.8e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00887 - - gmx:100789126 376.326