Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00884 ATGGATCCCTTCAACGGATCCACCTCCGAACCCGATAACCCTATCGCCACCTGTTCCTCCATGCTCTCCCTCCGCCGCTTCGCCCAGTGCCGTGACTTCGCCCGCCGCCTCCCCCCCTCCGACTCCACCGCCCGAGTCCTCGCAGTCGCTGACGTCCTCTCCGCCGCCGATTTCTACTCCGTCCTCCAGCTCCGCCCCTCCGACGGCGCCAACCGCGACCTCGCGCGCCGCCAGTACGCCACGCTGGCCCTCCTCCTGGACCCGACCAGCCCCGACAAGCTCCCCTTCGCCGACGAAGCCCTCGCACGTGTCCAAGAGGCCTGGCACGTGCTCTCCCACCCCGAACGCCGCGCCCTCCACGACCTGGAGCTCCAACGCGCCACCGCAGCGTTGACGTTCTGGACCGCGTGCCCCTACTGCTGGAACCTCTTCGAGTACGAGAAGAGGTACGAGGGTTGCGCGTTGCTGTGCCAGGCTTGCCAGAAGTCCTTCCAGGGCGAGGCGGTGAAGCCGCCGGTCAAGGTGGGCGACGCGGTGGTCGAGGGGGAGGAGCTCCGCCAGTACTACTCCTGCGAGGCCAGTGTGGCTTTGATGTATTATGAGGTTAAGACGGAGGAGAATAATCATAACAACGTGTTCGCTAAACAAAATGCCCAATACGTGTACATTTCTGATGACGATGAAGGGTTAGGGTTTGTGAGAAACGTAGGGTTGCGAGGTAGTGAGAAGCGGCGAATGAGGGTAAAGACTGTGGCGAATAAAGCCCTAGGGAGCAGAACTAGGAGGACTCTTGATAGTGACTCGGATTTGGATTTGGATTTGGATGATGGTGAATTGGAGTTCACGGAAGGAGATGATGATGTCTTTGTTGGTGGCGTGCAACATGTTCGGAATTACTATAACTCAGAAGCTCAAATGATAAGAGGTAGCTTTCCTCATCCATTCATCTCTAGGACATACAAAACCAGTTTCTTGAAGCCAAGATCAAAGGCAGAGATCAAATTATTGGCTGCTAAGAAACATAGTGAAGCAGAAAAGAGACGGAGAACGAGAATCAATGGTCAATATGAAACCCTTCGAAATATCCTCCCCAACTTGATCAAAAGGGACAAGGCATCAGTATTGGCAGAGACTATCAAGCAAGTGAAGGAGCTGAAGAAGAAGGTAACAAAACTGGAAGAAGATAACTCTGCTAACCCATCAAAGGATGTAAAGTTTCCTAGTGGGGCAGACAAGTTGAATTTGGGAAAATGTAATAATGAAGGCCTAGTGAAGGCTACATTGAGTTGTGAGGATAGTCCAAGATTGATGTCATCAATATCAAGGGCACTAGGGTCAGTGAAAACCAGAGTGGTAAAGGCTGAGATAGTGAGTGTGGGTGGTAGGACAAGAAGTGTGTTGTGGGTGCAAGGTATTGGAAATGATGGTTTAGGGATGCTGAAGAGCACTTTGAAGGTTGCCATGCACAAGCCAGCCTTTAAGATGAGGCGTTTTACTCAGTAA 1503 0.5276 MDPFNGSTSEPDNPIATCSSMLSLRRFAQCRDFARRLPPSDSTARVLAVADVLSAADFYSVLQLRPSDGANRDLARRQYATLALLLDPTSPDKLPFADEALARVQEAWHVLSHPERRALHDLELQRATAALTFWTACPYCWNLFEYEKRYEGCALLCQACQKSFQGEAVKPPVKVGDAVVEGEELRQYYSCEASVALMYYEVKTEENNHNNVFAKQNAQYVYISDDDEGLGFVRNVGLRGSEKRRMRVKTVANKALGSRTRRTLDSDSDLDLDLDDGELEFTEGDDDVFVGGVQHVRNYYNSEAQMIRGSFPHPFISRTYKTSFLKPRSKAEIKLLAAKKHSEAEKRRRTRINGQYETLRNILPNLIKRDKASVLAETIKQVKELKKKVTKLEEDNSANPSKDVKFPSGADKLNLGKCNNEGLVKATLSCEDSPRLMSSISRALGSVKTRVVKAEIVSVGGRTRSVLWVQGIGNDGLGMLKSTLKVAMHKPAFKMRRFTQ 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00884 500 SUPERFAMILY Chaperone J-domain 51 124 IPR036869 -
Cca06g00884 500 Pfam DnaJ domain 57 121 IPR001623 -
Cca06g00884 500 Coils Coil 375 395 - -
Cca06g00884 500 CDD ACT_UUR-ACR-like 427 477 - -
Cca06g00884 500 SMART finulus 342 391 IPR011598 GO:0046983
Cca06g00884 500 Gene3D DnaJ domain 52 123 IPR036869 -
Cca06g00884 500 ProSiteProfiles dnaJ domain profile. 57 124 IPR001623 -
Cca06g00884 500 PANTHER CHAPERONE DNAJ-DOMAIN PROTEIN 1 291 - -
Cca06g00884 500 Gene3D - 337 404 IPR036638 GO:0046983
Cca06g00884 500 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 340 398 IPR036638 GO:0046983
Cca06g00884 500 SMART dnaj_3 56 116 IPR001623 -
Cca06g00884 500 Pfam Helix-loop-helix DNA-binding domain 340 385 IPR011598 GO:0046983
Cca06g00884 500 CDD DnaJ 57 112 IPR001623 -
Cca06g00884 500 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 291 - -
Cca06g00884 500 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 336 385 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00884 Cca-Chr6 22219398 22227598 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00884 10 177 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT5G64360 34.071 6.92e-24 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca06g00884 DnaJ 7.5e-08 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00884 - - gsj:114406356 379.022