Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00876 ATGCCTGAGAACACACACTCTGCTACCTCTAACCTTCTCTGTTCGGAGAACAGTAGTACCTGCTTCGACGATGATTTGGACTGCGATGCCGCGGACGCCTCCAGAATCTCGCATTTCTGGGACCACGGGAACGTTAACTCTGAACTCGAGGCTAGTGGATCGGAGTTGTTGGCGTGTTTTGTGGCGCAGAGTGAGGAGACTGTGAGGGCTATGGTTGAGAGAGAGAGGGAGCATTTGCCGAGGGAGGATTACCTTAAGAGGCTCAGAAGTGGGGAGTTGGACTTGAGTGTTAGGAGGGAGGCTCTTGATTGGATTTGGAAGGCTCATACTTATTTTGGCTTTGGACCCTTGAGTTTTTGTTTGGCTGTGAACTACTTGGATCGCTTCCTGTCGGCTTTTGAGTTACCGGGAGGTGCAAGTTGGACTGTGCAATTGTTAGCTGTTGCTTGCTTGTCAATTGCAGCTAAAATGGAGGAGATTAAAGTGCCTCAATCTGTAGATTTACAGGTTGGAGAACCAAAGTTTGTGTTCGAAGCAAAAACCATTCAAAAAATGGAACTACTGCTTTTAAGCACATTGAGATGGAAAATGAGCGCTGTAACTCCTTGTTCCTTCATAGACTACTTCCTTGGTAAGATCACTTGTGAGCCGCATCCAGCAAAATCAGTCATTTCAGGATCACTGCAGCTCATCCTTGGCATAATCAGAGGTATTGACTTCTTGGAATTCCGGCCTTCTGAGATTGCCGCCGCTGTGGCAATTTCCCTTTTAAAGGAATCGCAAGCAAAAGAGATCGATAAGGCCATGCCTGATTTCTTAATTGTAGAGAAGGGGAGAGTTCTAAAGTGTGTTGAATTGATAAGAGATTTGTCCCTGATCAATGTTGCTGCTAGTAAGGTGCCATTTGTGCCCCAAAGTCCTGTTGGGGTGCTTGATGCTGGGTGCTTAAGTTTTAAGAGTGATGAATTAACAGTTGGTTCATGTCCAAATTCTTCACATAATAGTTCAAATCCAAACACTACTAAGAGGATCAAACCTGATGGACCTTCTAATGGAACCTCCAAGTCATGA 1071 0.4538 MPENTHSATSNLLCSENSSTCFDDDLDCDAADASRISHFWDHGNVNSELEASGSELLACFVAQSEETVRAMVEREREHLPREDYLKRLRSGELDLSVRREALDWIWKAHTYFGFGPLSFCLAVNYLDRFLSAFELPGGASWTVQLLAVACLSIAAKMEEIKVPQSVDLQVGEPKFVFEAKTIQKMELLLLSTLRWKMSAVTPCSFIDYFLGKITCEPHPAKSVISGSLQLILGIIRGIDFLEFRPSEIAAAVAISLLKESQAKEIDKAMPDFLIVEKGRVLKCVELIRDLSLINVAASKVPFVPQSPVGVLDAGCLSFKSDELTVGSCPNSSHNSSNPNTTKRIKPDGPSNGTSKS 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00876 356 Pfam Cyclin, N-terminal domain 68 198 IPR006671 -
Cca06g00876 356 CDD CYCLIN 98 190 IPR013763 -
Cca06g00876 356 MobiDBLite consensus disorder prediction 325 356 - -
Cca06g00876 356 SMART cyclin_7 103 191 IPR013763 -
Cca06g00876 356 ProSitePatterns Cyclins signature. 98 129 IPR006671 -
Cca06g00876 356 Gene3D - 70 285 - -
Cca06g00876 356 Gene3D - 81 198 - -
Cca06g00876 356 Pfam Cyclin, C-terminal domain 200 295 IPR004367 -
Cca06g00876 356 SUPERFAMILY Cyclin-like 60 197 IPR036915 -
Cca06g00876 356 PANTHER CYCLIN-D4-1-LIKE 1 341 - -
Cca06g00876 356 PANTHER CYCLINS 1 341 IPR039361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00876 Cca-Chr6 22079249 22081878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00876 62 277 Core Cell Cycle Gene Families AT5G65420 58.182 1.23e-89 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00876 K18810 - gmx:100794010 549.28