Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00873 ATGGAATTCGAGGATCCGGAGGAGCAAGAGGAAGAGCTTTGTATGGCAGGTGGAGCCAGTTACGACTCGCTGCCCAACCCGACTCGGATGAAGATGCCAGGTGGGGCGGAGGTTATggcggcgacgccggtcaggagcaccagcaacggcgccggcgccggAAAGGCGAGGTACAGAGAGTGTCTGAAGAATCACGCCGTCGGGATCGGCGGCCATGCCCTCGACGGCTGCGGCGAGTTCATGGCGGCGGGGACGGAGGGAACTCTGGACGCGCTGAAATGCGCCGCCTGCAACTGCCACAGAAACTTCCACCGCAAGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCACCACCCGCCTCCGCCGCCGCAGTTCGCGGCGTACTACCGGACGCCGGCGGGGTACCTGCACGTGGGAGGGCAGCACCGCGCGGCGGGGACGCTGGCGCTGCCGTCGACCTCCGGTGGCGGCGGGACGCAGAGCACTCGGGAGGACCAGGAGGACGTTTCGAACCCGAGTGCAGGAGGAAGCGGTTCGAAGAAACGGTTCAGAACGAAGTTCACATCTGAACAAAAGGACAAAATGCTGGACTTGGCCGAAAAACTAGGTTGGAGGATTCAGAAACACGACGAGGCTGTGGTCCAAGCCTTCTGCAACGAAACCGGCGTTAAGCGTCACgttctcaaggtttggatgcataacaacaagcacactctcgTTTGTTACAATGGTGACGCGTTTGGAACCTTTTTTTCGCGTCCAAGATATCAGCTGTTATAA 1011 0.3976 MEFEDPEEQEEELCMAGGASYDSLPNPTRMKMPGGAEVMAATPVRSTSNGAGAGKARYRECLKNHAVGIGGHALDGCGEFMAAGTEGTLDALKCAACNCHRNFHRKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHPPPPPQFAAYYRTPAGYLHVGGQHRAAGTLALPSTSGGGGTQSTREDQEDVSNPSAGGSGSKKRFRTKFTSEQKDKMLDLAEKLGWRIQKHDEAVVQAFCNETGVKRHVLKVWMHNNKHTLVCYNGDAFGTFFSRPRYQLL 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00873 336 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 42 316 - -
Cca06g00873 336 SUPERFAMILY Homeodomain-like 245 315 IPR009057 -
Cca06g00873 336 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 42 316 - -
Cca06g00873 336 MobiDBLite consensus disorder prediction 223 260 - -
Cca06g00873 336 MobiDBLite consensus disorder prediction 229 255 - -
Cca06g00873 336 MobiDBLite consensus disorder prediction 165 205 - -
Cca06g00873 336 Pfam ZF-HD protein dimerisation region 56 108 IPR006456 -
Cca06g00873 336 Gene3D - 242 318 - -
Cca06g00873 336 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 57 107 IPR006456 -
Cca06g00873 336 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 257 313 IPR006455 -
Cca06g00873 336 Coils Coil 105 107 - -
Cca06g00873 336 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 58 107 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00873 Cca-Chr6 22029590 22030964 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00873 206 319 ZF-HD Transcription Factor Family AT4G24660 53.509 7.55e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Cca06g00873 ZF-HD_dimer 1.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00873 - - gmx:100795063 229.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00873 06 22029590 22030964 Cca11g00730 11 12813524 12814846 PCT