Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00864 ATGGAGGATGCAATGAGGCGTCTCAACGGGGCTGACCCCAAGATCGACGGAGGAGGAGTCGCCGACAACCCGAAGCGCTCCGCCGTAAACAAGAGAGCCCTGCGAGAAAACGACGGCGGCGGCGGAGCGATGAGGTACCGCGGCGTGAGGCGTAGGCCGTGGGGGCGGTACGCCGCCGAGATAAGGGACCCTCAGTCGAAGGAGAGGCGGTGGCTTGGCACCTTCGACACGGCGGAGGAAGCCGCCTGCGCCTACGACTGCGCCGCCAGAGCCATGCGCGGGCTCAAGGCTCGCACCAACTTCGTGTACCCTACTTCTCCGGTGAACCCTTGCTCCGCCACCGAACACTTGTTCCCTTCCTTCAACTTCCCGAAACATGTACACTCTCAGAAACCACCCTTCGCCAACAACCACCAGCACCGCCACTTCACCTTTGACCCTCACGCCGTTGACTTTTCAGCGCCGCGAAACCCTTCACTCAACATGCTCCTCTTTCGCGACCTCATTAACCCTTCCTCCAACCCTTCTTTGCTTTCCTCCACTAACAACCACTTCCACAACAACAAAACCCTCGCTTCCTCTCTCTCCTCGTTACCTTCGCCTTCTTCTCTCGCTCCTTGTTACAGTAATACTTCTTTCGGAGCCTCGTCTTCTGATAACATCAACACCCTTTGCGGAACTAGTTTCGCTGATGATAATGATGGTTCTGGATTTTTCTCCAGGGAGTCTTCCGATTCGGGGTTGTTGGAAGAGATAGTTAACAAGTTCTTGCCCAAAACGAAGCCTAATAAATCAGATGGTCTTCCCAAAATGGAGACTTTCAGTTTTCGGAACCCTCAGGAGTCGCTTCTTCCTCCGCTTGTTTCTGACTCGACGGTTGTTTCCACCGCGCAATGTTATAATAGTGACACGAAGAAGGGGTTTCCAAAGAATGAAAATTTAAGTGTTTTTTCTTTTGATCATCATCACCAGGGTTTTCCCATGCAGCAATTGGACAACTTTAATAATGGGTTTAATAGCTTGCAGGGTGTGAGTCTGGGGAATGAACAAGTCATGATGAATCATGCAGAGAACTGTGTCGTTGATGATGTTTTCCCGTACCCAGAGCTGCTTAATGCTTTTGCAATCAGGATGCAAAATGCTTAG 1146 0.5183 MEDAMRRLNGADPKIDGGGVADNPKRSAVNKRALRENDGGGGAMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVYPTSPVNPCSATEHLFPSFNFPKHVHSQKPPFANNHQHRHFTFDPHAVDFSAPRNPSLNMLLFRDLINPSSNPSLLSSTNNHFHNNKTLASSLSSLPSPSSLAPCYSNTSFGASSSDNINTLCGTSFADDNDGSGFFSRESSDSGLLEEIVNKFLPKTKPNKSDGLPKMETFSFRNPQESLLPPLVSDSTVVSTAQCYNSDTKKGFPKNENLSVFSFDHHHQGFPMQQLDNFNNGFNSLQGVSLGNEQVMMNHAENCVVDDVFPYPELLNAFAIRMQNA 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00864 381 MobiDBLite consensus disorder prediction 1 46 - -
Cca06g00864 381 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 27 381 - -
Cca06g00864 381 Gene3D AP2/ERF domain 44 103 IPR036955 GO:0003700|GO:0006355
Cca06g00864 381 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Cca06g00864 381 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 27 381 - -
Cca06g00864 381 CDD AP2 45 101 IPR001471 GO:0003700|GO:0006355
Cca06g00864 381 Pfam AP2 domain 45 94 IPR001471 GO:0003700|GO:0006355
Cca06g00864 381 SUPERFAMILY DNA-binding domain 45 102 IPR016177 GO:0003677
Cca06g00864 381 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Cca06g00864 381 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Cca06g00864 381 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00864 Cca-Chr6 21839222 21840728 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00864 1 259 AP2-EREBP Transcription Factor Family AT1G24590 38.298 2.74e-43 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca06g00864 AP2 2.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00864 - - gmx:102669715 480.715