Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00863 ATGATGAATCTACAGGTATTTTGTGTTGGAAACATTGATTCTGTTAGGGTTATTGATGATTTTATTGGAATTTGGGATCCAAATGGTACTGTTTACCGTGAACCCATAATATGCCGCAACATACCGAGAATTGTTTCTGGATGGAAAAAACCCATTTGTATTGGTAGGCATGCTTTTGGTGACCAGTATAAGGCCACTGACGCAATAATCAGAAAACCAGGGAAGCTTAAGTTGGTATTTGATTATAATTTGCTGGAGGAGGTGAAGAGGGTGGCTGAATCTGCTCATAGAATGAGAACCAAATTGGGCATTTATGCATATTTTAAGTTGCCTTATCCCCTTAAAAACTTAAGGAATGTTGCTGGGAGCCGGAAAACCAAACTGATGTTTCTCCCTAGTGGAATGTTGAAAAGAGAGAAGAATCAGTCTAGACATGAGAGAAGAGCCAAGCTGGATAATAATGAAAAATTAGGGGATTTTACTCATAAGTTGGAAGCTGCATGTGTTGCATGTGTTGAGACAGTGGAGTCAGAAAAGATGACTAAAGATCTTGCAATTCTATTTCATGGACCAAAAAGGGAAAGAGAATATAGAGTGGTGATCAAGTTTGTTGCCAGGGAAAACTTGCACCACTTGGGTCAGTTTTTAGCTGGTAAACGTGCTGATGCTCCACAGGAAGCACTCCAGATTCTTGACATTGTATTGAGAGAGCTATCATCTAAGAGGTTTTGTCCAATCGGGAGATCCTTCTTTTCACCTGATATTAGAACACCTCAACGGCTTGGAGAGGGTTTGGAGTCATGGTGTGGATTTTACCAAAGCATAAGGCCTACTCAGATGGGTCTTTCCCTCAATATTGATATGGCTTCTGTTGCATTCATTGAACCTCTTCCAGTTGTGGAATATGTTGGCCAGCTATTAGGAAAAGATATCCTGGCGAGGCAATTGTCTGATACTGATCGCATTAAAATTAAGAAAGCCCTCAGAGGAGTTAAATTTGAAGTTACCCACAGAGGGAGTGTCAGAAGAAAGTATCATGTTTCTGGTTTGACTTCTCAGCCAACCAGAGAACTCATGTTTCCTGTTGATGAGAACTCAACTATGAAGTCAGTAGTTGAATACTTCCAAGAGATGTATGGTTTCACAATTAAATATACTCACCTTCCTTGCCTTCAAGTAGGAAACCAAAAGAAAGCAAATTATTTACGTATGGAGGTAGGGAAAATTCCTGCGAATTGA 1239 0.3995 MMNLQVFCVGNIDSVRVIDDFIGIWDPNGTVYREPIICRNIPRIVSGWKKPICIGRHAFGDQYKATDAIIRKPGKLKLVFDYNLLEEVKRVAESAHRMRTKLGIYAYFKLPYPLKNLRNVAGSRKTKLMFLPSGMLKREKNQSRHERRAKLDNNEKLGDFTHKLEAACVACVETVESEKMTKDLAILFHGPKREREYRVVIKFVARENLHHLGQFLAGKRADAPQEALQILDIVLRELSSKRFCPIGRSFFSPDIRTPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMASVAFIEPLPVVEYVGQLLGKDILARQLSDTDRIKIKKALRGVKFEVTHRGSVRRKYHVSGLTSQPTRELMFPVDENSTMKSVVEYFQEMYGFTIKYTHLPCLQVGNQKKANYLRMEVGKIPAN 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00863 412 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 186 409 - -
Cca06g00863 412 Pfam N-terminal domain of argonaute 189 235 IPR032474 -
Cca06g00863 412 Gene3D Isopropylmalate Dehydrogenase 25 135 - -
Cca06g00863 412 Gene3D Isopropylmalate Dehydrogenase 145 211 - -
Cca06g00863 412 CDD PAZ_argonaute_like 296 409 - -
Cca06g00863 412 SUPERFAMILY PAZ domain 215 407 IPR036085 GO:0005515
Cca06g00863 412 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 28 97 - -
Cca06g00863 412 Pfam PAZ domain 323 410 IPR003100 GO:0005515
Cca06g00863 412 ProSiteProfiles PAZ domain profile. 297 411 IPR003100 GO:0005515
Cca06g00863 412 PANTHER PROTEIN ARGONAUTE 10 186 409 - -
Cca06g00863 412 Pfam Argonaute linker 1 domain 245 294 IPR014811 -
Cca06g00863 412 Gene3D paz domain 291 412 - -
Cca06g00863 412 SMART DUF1785_2 244 296 IPR014811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00863 Cca-Chr6 21827345 21830252 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00863 187 409 Eukaryotic Initiation Factors Gene Family AT5G43810 82.511 1.09e-131 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00863 K11593 - ccaj:109819045 517.694